Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Complement C1q tumor necrosis factor-related protein 6

Gene

C1qtnf6

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Complement C1q tumor necrosis factor-related protein 6
Gene namesi
Name:C1qtnf6
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1307057. C1qtnf6.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_000032008525 – 263Complement C1q tumor necrosis factor-related protein 6Add BLAST239

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi76N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ3T1I2.
PRIDEiQ3T1I2.

PTM databases

PhosphoSitePlusiQ3T1I2.

Expressioni

Gene expression databases

BgeeiENSRNOG00000007300.
GenevisibleiQ3T1I2. RN.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000009551.

Structurei

3D structure databases

ProteinModelPortaliQ3T1I2.
SMRiQ3T1I2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini82 – 123Collagen-likeAdd BLAST42
Domaini124 – 263C1qPROSITE-ProRule annotationAdd BLAST140

Keywords - Domaini

Collagen, Signal

Phylogenomic databases

eggNOGiENOG410IKX5. Eukaryota.
ENOG410XQIM. LUCA.
GeneTreeiENSGT00760000118830.
HOGENOMiHOG000101544.
HOVERGENiHBG108220.
InParanoidiQ3T1I2.
KOiK19470.
OMAiKETYVHV.
OrthoDBiEOG091G0LRA.
PhylomeDBiQ3T1I2.
TreeFamiTF329591.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiView protein in InterPro
IPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
PfamiView protein in Pfam
PF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
PRINTSiPR00007. COMPLEMNTC1Q.
SMARTiView protein in SMART
SM00110. C1Q. 1 hit.
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiView protein in PROSITE
PS50871. C1Q. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3T1I2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVIMGTASL GSIWAVFLLP LVFGVPTEEP TFGESVASHL PKNCQRCCDP
60 70 80 90 100
EDPLSPADTV NAVPPYVLPE VRPYINITIL KGDKGDRGPS GTPGKPGKNG
110 120 130 140 150
TRGDRGSQGI KGDKGQAGSP GSSCQTHYSA FSVGRKTGLH SSENFLSLLF
160 170 180 190 200
DRVFVNTDGH FDMATGRFVA PLRGLYFFSL NVHSWNYKET YVHIVHNEQA
210 220 230 240 250
VVILYAQPSE RSIMQSQSVM LPLVPGDYVW VRLFKREREN GIYSDDMDTY
260
ITFSGHLIKA EDN
Length:263
Mass (Da):28,973
Last modified:October 11, 2005 - v1
Checksum:iB9352FD2E605BB7C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101907 mRNA. Translation: AAI01908.1.
RefSeqiNP_001030104.1. NM_001034932.1.
UniGeneiRn.17708.

Genome annotation databases

EnsembliENSRNOT00000009551; ENSRNOP00000009551; ENSRNOG00000007300.
GeneIDi315114.
KEGGirno:315114.
UCSCiRGD:1307057. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101907 mRNA. Translation: AAI01908.1.
RefSeqiNP_001030104.1. NM_001034932.1.
UniGeneiRn.17708.

3D structure databases

ProteinModelPortaliQ3T1I2.
SMRiQ3T1I2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000009551.

PTM databases

PhosphoSitePlusiQ3T1I2.

Proteomic databases

PaxDbiQ3T1I2.
PRIDEiQ3T1I2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000009551; ENSRNOP00000009551; ENSRNOG00000007300.
GeneIDi315114.
KEGGirno:315114.
UCSCiRGD:1307057. rat.

Organism-specific databases

CTDi114904.
RGDi1307057. C1qtnf6.

Phylogenomic databases

eggNOGiENOG410IKX5. Eukaryota.
ENOG410XQIM. LUCA.
GeneTreeiENSGT00760000118830.
HOGENOMiHOG000101544.
HOVERGENiHBG108220.
InParanoidiQ3T1I2.
KOiK19470.
OMAiKETYVHV.
OrthoDBiEOG091G0LRA.
PhylomeDBiQ3T1I2.
TreeFamiTF329591.

Miscellaneous databases

PROiPR:Q3T1I2.

Gene expression databases

BgeeiENSRNOG00000007300.
GenevisibleiQ3T1I2. RN.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiView protein in InterPro
IPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
PfamiView protein in Pfam
PF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
PRINTSiPR00007. COMPLEMNTC1Q.
SMARTiView protein in SMART
SM00110. C1Q. 1 hit.
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiView protein in PROSITE
PS50871. C1Q. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC1QT6_RAT
AccessioniPrimary (citable) accession number: Q3T1I2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: October 11, 2005
Last modified: May 10, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.