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Q3T083

- SDF2L_BOVIN

UniProt

Q3T083 - SDF2L_BOVIN

Protein

Stromal cell-derived factor 2-like protein 1

Gene

SDF2L1

Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Stromal cell-derived factor 2-like protein 1
    Short name:
    SDF2-like protein 1
    Gene namesi
    Name:SDF2L1
    OrganismiBos taurus (Bovine)
    Taxonomic identifieri9913 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
    ProteomesiUP000009136: Chromosome 17

    Subcellular locationi

    Endoplasmic reticulum lumen PROSITE-ProRule annotation

    GO - Cellular componenti

    1. endoplasmic reticulum lumen Source: UniProtKB-SubCell
    2. membrane Source: InterPro

    Keywords - Cellular componenti

    Endoplasmic reticulum

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2828Sequence AnalysisAdd
    BLAST
    Chaini29 – 221193Stromal cell-derived factor 2-like protein 1PRO_0000331218Add
    BLAST

    Proteomic databases

    PRIDEiQ3T083.

    Interactioni

    Protein-protein interaction databases

    STRINGi9913.ENSBTAP00000000074.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3T083.
    SMRiQ3T083. Positions 31-206.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini33 – 8755MIR 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini95 – 15056MIR 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini151 – 20555MIR 3PROSITE-ProRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi218 – 2214Prevents secretion from ERPROSITE-ProRule annotation

    Sequence similaritiesi

    Contains 3 MIR domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiNOG136457.
    GeneTreeiENSGT00510000046663.
    HOGENOMiHOG000236354.
    HOVERGENiHBG024385.
    InParanoidiQ3T083.
    OMAiSGQHWER.
    OrthoDBiEOG71VSV4.
    TreeFamiTF314557.

    Family and domain databases

    InterProiIPR027005. GlyclTrfase_39_like.
    IPR016093. MIR_motif.
    [Graphical view]
    PANTHERiPTHR10050. PTHR10050. 1 hit.
    PfamiPF02815. MIR. 1 hit.
    [Graphical view]
    SMARTiSM00472. MIR. 3 hits.
    [Graphical view]
    SUPFAMiSSF82109. SSF82109. 1 hit.
    PROSITEiPS00014. ER_TARGET. 1 hit.
    PS50919. MIR. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q3T083-1 [UniParc]FASTAAdd to Basket

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    MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR    50
    VRLHSHDIKY GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC 100
    GQAVRLTHVL TGKNLHTHHF PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS 150
    GQHWEREAAV RFQHVGTSVF LSVTGEQYGS PIRGQHEVHG MASASAHNKW 200
    KAMEGIFIKP SPEAPGGHDE L 221
    Length:221
    Mass (Da):23,557
    Last modified:October 11, 2005 - v1
    Checksum:i79943DE6824B641E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC102528 mRNA. Translation: AAI02529.1.
    RefSeqiNP_001030400.1. NM_001035323.1.
    UniGeneiBt.16378.

    Genome annotation databases

    EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
    GeneIDi517962.
    KEGGibta:517962.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC102528 mRNA. Translation: AAI02529.1 .
    RefSeqi NP_001030400.1. NM_001035323.1.
    UniGenei Bt.16378.

    3D structure databases

    ProteinModelPortali Q3T083.
    SMRi Q3T083. Positions 31-206.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 9913.ENSBTAP00000000074.

    Proteomic databases

    PRIDEi Q3T083.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSBTAT00000000074 ; ENSBTAP00000000074 ; ENSBTAG00000000067 .
    GeneIDi 517962.
    KEGGi bta:517962.

    Organism-specific databases

    CTDi 23753.

    Phylogenomic databases

    eggNOGi NOG136457.
    GeneTreei ENSGT00510000046663.
    HOGENOMi HOG000236354.
    HOVERGENi HBG024385.
    InParanoidi Q3T083.
    OMAi SGQHWER.
    OrthoDBi EOG71VSV4.
    TreeFami TF314557.

    Miscellaneous databases

    NextBioi 20872550.

    Family and domain databases

    InterProi IPR027005. GlyclTrfase_39_like.
    IPR016093. MIR_motif.
    [Graphical view ]
    PANTHERi PTHR10050. PTHR10050. 1 hit.
    Pfami PF02815. MIR. 1 hit.
    [Graphical view ]
    SMARTi SM00472. MIR. 3 hits.
    [Graphical view ]
    SUPFAMi SSF82109. SSF82109. 1 hit.
    PROSITEi PS00014. ER_TARGET. 1 hit.
    PS50919. MIR. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Mammalian Gene Collection (MGC) project
      Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: Crossbred X Angus.
      Tissue: Liver.

    Entry informationi

    Entry nameiSDF2L_BOVIN
    AccessioniPrimary (citable) accession number: Q3T083
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 29, 2008
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3