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Q3T083

- SDF2L_BOVIN

UniProt

Q3T083 - SDF2L_BOVIN

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Protein

Stromal cell-derived factor 2-like protein 1

Gene
SDF2L1
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Stromal cell-derived factor 2-like protein 1
Short name:
SDF2-like protein 1
Gene namesi
Name:SDF2L1
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 17

Subcellular locationi

Endoplasmic reticulum lumen Reviewed prediction

GO - Cellular componenti

  1. endoplasmic reticulum lumen Source: UniProtKB-SubCell
  2. membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828 Reviewed predictionAdd
BLAST
Chaini29 – 221193Stromal cell-derived factor 2-like protein 1PRO_0000331218Add
BLAST

Proteomic databases

PRIDEiQ3T083.

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074.

Structurei

3D structure databases

ProteinModelPortaliQ3T083.
SMRiQ3T083. Positions 31-206.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 8755MIR 1Add
BLAST
Domaini95 – 15056MIR 2Add
BLAST
Domaini151 – 20555MIR 3Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi218 – 2214Prevents secretion from ER Reviewed prediction

Sequence similaritiesi

Contains 3 MIR domains.

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG136457.
GeneTreeiENSGT00510000046663.
HOGENOMiHOG000236354.
HOVERGENiHBG024385.
InParanoidiQ3T083.
OMAiSGQHWER.
OrthoDBiEOG71VSV4.
TreeFamiTF314557.

Family and domain databases

InterProiIPR027005. GlyclTrfase_39_like.
IPR016093. MIR_motif.
[Graphical view]
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiPF02815. MIR. 1 hit.
[Graphical view]
SMARTiSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3T083-1 [UniParc]FASTAAdd to Basket

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MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR    50
VRLHSHDIKY GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC 100
GQAVRLTHVL TGKNLHTHHF PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS 150
GQHWEREAAV RFQHVGTSVF LSVTGEQYGS PIRGQHEVHG MASASAHNKW 200
KAMEGIFIKP SPEAPGGHDE L 221
Length:221
Mass (Da):23,557
Last modified:October 11, 2005 - v1
Checksum:i79943DE6824B641E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC102528 mRNA. Translation: AAI02529.1.
RefSeqiNP_001030400.1. NM_001035323.1.
UniGeneiBt.16378.

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneIDi517962.
KEGGibta:517962.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC102528 mRNA. Translation: AAI02529.1 .
RefSeqi NP_001030400.1. NM_001035323.1.
UniGenei Bt.16378.

3D structure databases

ProteinModelPortali Q3T083.
SMRi Q3T083. Positions 31-206.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9913.ENSBTAP00000000074.

Proteomic databases

PRIDEi Q3T083.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSBTAT00000000074 ; ENSBTAP00000000074 ; ENSBTAG00000000067 .
GeneIDi 517962.
KEGGi bta:517962.

Organism-specific databases

CTDi 23753.

Phylogenomic databases

eggNOGi NOG136457.
GeneTreei ENSGT00510000046663.
HOGENOMi HOG000236354.
HOVERGENi HBG024385.
InParanoidi Q3T083.
OMAi SGQHWER.
OrthoDBi EOG71VSV4.
TreeFami TF314557.

Miscellaneous databases

NextBioi 20872550.

Family and domain databases

InterProi IPR027005. GlyclTrfase_39_like.
IPR016093. MIR_motif.
[Graphical view ]
PANTHERi PTHR10050. PTHR10050. 1 hit.
Pfami PF02815. MIR. 1 hit.
[Graphical view ]
SMARTi SM00472. MIR. 3 hits.
[Graphical view ]
SUPFAMi SSF82109. SSF82109. 1 hit.
PROSITEi PS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Crossbred X Angus.
    Tissue: Liver.

Entry informationi

Entry nameiSDF2L_BOVIN
AccessioniPrimary (citable) accession number: Q3T083
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 11, 2005
Last modified: February 19, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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