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Protein

Stromal cell-derived factor 2-like protein 1

Gene

SDF2L1

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Stromal cell-derived factor 2-like protein 1
Short name:
SDF2-like protein 1
Gene namesi
Name:SDF2L1
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 17

Subcellular locationi

  • Endoplasmic reticulum lumen PROSITE-ProRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_000033121829 – 221Stromal cell-derived factor 2-like protein 1Add BLAST193

Proteomic databases

PaxDbiQ3T083.
PRIDEiQ3T083.

Expressioni

Gene expression databases

BgeeiENSBTAG00000000067.

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074.

Structurei

3D structure databases

ProteinModelPortaliQ3T083.
SMRiQ3T083.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 87MIR 1PROSITE-ProRule annotationAdd BLAST55
Domaini95 – 150MIR 2PROSITE-ProRule annotationAdd BLAST56
Domaini151 – 205MIR 3PROSITE-ProRule annotationAdd BLAST55

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi218 – 221Prevents secretion from ERPROSITE-ProRule annotation4

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiKOG3358. Eukaryota.
ENOG410ZBU3. LUCA.
GeneTreeiENSGT00510000046663.
HOGENOMiHOG000236354.
HOVERGENiHBG024385.
InParanoidiQ3T083.
OMAiWTVRCSG.
OrthoDBiEOG091G0MFB.
TreeFamiTF314557.

Family and domain databases

InterProiView protein in InterPro
IPR027005. GlyclTrfase_39-like.
IPR016093. MIR_motif.
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiView protein in Pfam
PF02815. MIR. 1 hit.
SMARTiView protein in SMART
SM00472. MIR. 3 hits.
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiView protein in PROSITE
PS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3T083-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR
60 70 80 90 100
VRLHSHDIKY GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC
110 120 130 140 150
GQAVRLTHVL TGKNLHTHHF PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS
160 170 180 190 200
GQHWEREAAV RFQHVGTSVF LSVTGEQYGS PIRGQHEVHG MASASAHNKW
210 220
KAMEGIFIKP SPEAPGGHDE L
Length:221
Mass (Da):23,557
Last modified:October 11, 2005 - v1
Checksum:i79943DE6824B641E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102528 mRNA. Translation: AAI02529.1.
RefSeqiNP_001030400.1. NM_001035323.1.
UniGeneiBt.16378.

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneIDi517962.
KEGGibta:517962.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102528 mRNA. Translation: AAI02529.1.
RefSeqiNP_001030400.1. NM_001035323.1.
UniGeneiBt.16378.

3D structure databases

ProteinModelPortaliQ3T083.
SMRiQ3T083.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074.

Proteomic databases

PaxDbiQ3T083.
PRIDEiQ3T083.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneIDi517962.
KEGGibta:517962.

Organism-specific databases

CTDi23753.

Phylogenomic databases

eggNOGiKOG3358. Eukaryota.
ENOG410ZBU3. LUCA.
GeneTreeiENSGT00510000046663.
HOGENOMiHOG000236354.
HOVERGENiHBG024385.
InParanoidiQ3T083.
OMAiWTVRCSG.
OrthoDBiEOG091G0MFB.
TreeFamiTF314557.

Gene expression databases

BgeeiENSBTAG00000000067.

Family and domain databases

InterProiView protein in InterPro
IPR027005. GlyclTrfase_39-like.
IPR016093. MIR_motif.
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiView protein in Pfam
PF02815. MIR. 1 hit.
SMARTiView protein in SMART
SM00472. MIR. 3 hits.
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiView protein in PROSITE
PS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiSDF2L_BOVIN
AccessioniPrimary (citable) accession number: Q3T083
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 11, 2005
Last modified: March 15, 2017
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.