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Q3T083 (SDF2L_BOVIN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Stromal cell-derived factor 2-like protein 1

Short name=SDF2-like protein 1
Gene names
Name:SDF2L1
OrganismBos taurus (Bovine) [Reference proteome]
Taxonomic identifier9913 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Protein attributes

Sequence length221 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Endoplasmic reticulum lumen Potential.

Sequence similarities

Contains 3 MIR domains.

Ontologies

Keywords
   Cellular componentEndoplasmic reticulum
   DomainRepeat
Signal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentendoplasmic reticulum lumen

Inferred from electronic annotation. Source: UniProtKB-SubCell

membrane

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2828 Potential
Chain29 – 221193Stromal cell-derived factor 2-like protein 1
PRO_0000331218

Regions

Domain33 – 8755MIR 1
Domain95 – 15056MIR 2
Domain151 – 20555MIR 3
Motif218 – 2214Prevents secretion from ER Potential

Sequences

Sequence LengthMass (Da)Tools
Q3T083 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 79943DE6824B641E

FASTA22123,557
        10         20         30         40         50         60 
MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR VRLHSHDIKY 

        70         80         90        100        110        120 
GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC GQAVRLTHVL TGKNLHTHHF 

       130        140        150        160        170        180 
PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS GQHWEREAAV RFQHVGTSVF LSVTGEQYGS 

       190        200        210        220 
PIRGQHEVHG MASASAHNKW KAMEGIFIKP SPEAPGGHDE L 

« Hide

References

[1]NIH - Mammalian Gene Collection (MGC) project
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Crossbred X Angus.
Tissue: Liver.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC102528 mRNA. Translation: AAI02529.1.
RefSeqNP_001030400.1. NM_001035323.1.
UniGeneBt.16378.

3D structure databases

ProteinModelPortalQ3T083.
SMRQ3T083. Positions 31-206.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9913.ENSBTAP00000000074.

Proteomic databases

PRIDEQ3T083.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneID517962.
KEGGbta:517962.

Organism-specific databases

CTD23753.

Phylogenomic databases

eggNOGNOG136457.
GeneTreeENSGT00510000046663.
HOGENOMHOG000236354.
HOVERGENHBG024385.
InParanoidQ3T083.
OMASGQHWER.
OrthoDBEOG71VSV4.
TreeFamTF314557.

Family and domain databases

InterProIPR027005. GlyclTrfase_39_like.
IPR016093. MIR_motif.
[Graphical view]
PANTHERPTHR10050. PTHR10050. 1 hit.
PfamPF02815. MIR. 1 hit.
[Graphical view]
SMARTSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMSSF82109. SSF82109. 1 hit.
PROSITEPS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio20872550.

Entry information

Entry nameSDF2L_BOVIN
AccessionPrimary (citable) accession number: Q3T083
Entry history
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 11, 2005
Last modified: February 19, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families