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Protein

Stromal cell-derived factor 2-like protein 1

Gene

SDF2L1

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Stromal cell-derived factor 2-like protein 1
Short name:
SDF2-like protein 1
Gene namesi
Name:SDF2L1
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 17

Organism-specific databases

VGNCiVGNC:34386 SDF2L1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_000033121829 – 221Stromal cell-derived factor 2-like protein 1Add BLAST193

Proteomic databases

PaxDbiQ3T083
PRIDEiQ3T083

Expressioni

Gene expression databases

BgeeiENSBTAG00000000067

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074

Structurei

3D structure databases

ProteinModelPortaliQ3T083
SMRiQ3T083
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 87MIR 1PROSITE-ProRule annotationAdd BLAST55
Domaini95 – 150MIR 2PROSITE-ProRule annotationAdd BLAST56
Domaini151 – 205MIR 3PROSITE-ProRule annotationAdd BLAST55

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi218 – 221Prevents secretion from ERPROSITE-ProRule annotation4

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiKOG3358 Eukaryota
ENOG410ZBU3 LUCA
GeneTreeiENSGT00510000046663
HOGENOMiHOG000236354
HOVERGENiHBG024385
InParanoidiQ3T083
OMAiRFQHVGT
OrthoDBiEOG091G0MFB
TreeFamiTF314557

Family and domain databases

InterProiView protein in InterPro
IPR027005 GlyclTrfase_39-like
IPR036300 MIR_dom_sf
IPR016093 MIR_motif
PANTHERiPTHR10050 PTHR10050, 1 hit
PfamiView protein in Pfam
PF02815 MIR, 1 hit
SMARTiView protein in SMART
SM00472 MIR, 3 hits
SUPFAMiSSF82109 SSF82109, 1 hit
PROSITEiView protein in PROSITE
PS00014 ER_TARGET, 1 hit
PS50919 MIR, 3 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3T083-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR
60 70 80 90 100
VRLHSHDIKY GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC
110 120 130 140 150
GQAVRLTHVL TGKNLHTHHF PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS
160 170 180 190 200
GQHWEREAAV RFQHVGTSVF LSVTGEQYGS PIRGQHEVHG MASASAHNKW
210 220
KAMEGIFIKP SPEAPGGHDE L
Length:221
Mass (Da):23,557
Last modified:October 11, 2005 - v1
Checksum:i79943DE6824B641E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102528 mRNA Translation: AAI02529.1
RefSeqiNP_001030400.1, NM_001035323.1
UniGeneiBt.16378

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067
GeneIDi517962
KEGGibta:517962

Similar proteinsi

Entry informationi

Entry nameiSDF2L_BOVIN
AccessioniPrimary (citable) accession number: Q3T083
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health