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Protein

Stromal cell-derived factor 2-like protein 1

Gene

SDF2L1

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Stromal cell-derived factor 2-like protein 1
Short name:
SDF2-like protein 1
Gene namesi
Name:SDF2L1
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 17

Subcellular locationi

Endoplasmic reticulum lumen PROSITE-ProRule annotation

GO - Cellular componenti

  1. endoplasmic reticulum lumen Source: UniProtKB-SubCell
  2. membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence AnalysisAdd
BLAST
Chaini29 – 221193Stromal cell-derived factor 2-like protein 1PRO_0000331218Add
BLAST

Proteomic databases

PRIDEiQ3T083.

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074.

Structurei

3D structure databases

ProteinModelPortaliQ3T083.
SMRiQ3T083. Positions 31-206.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 8755MIR 1PROSITE-ProRule annotationAdd
BLAST
Domaini95 – 15056MIR 2PROSITE-ProRule annotationAdd
BLAST
Domaini151 – 20555MIR 3PROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi218 – 2214Prevents secretion from ERPROSITE-ProRule annotation

Sequence similaritiesi

Contains 3 MIR domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG136457.
GeneTreeiENSGT00510000046663.
HOGENOMiHOG000236354.
HOVERGENiHBG024385.
InParanoidiQ3T083.
OMAiSGQHWER.
OrthoDBiEOG71VSV4.
TreeFamiTF314557.

Family and domain databases

InterProiIPR027005. GlyclTrfase_39_like.
IPR016093. MIR_motif.
[Graphical view]
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiPF02815. MIR. 1 hit.
[Graphical view]
SMARTiSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3T083-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MWSAGSGRAA GPALLGILLA LSLSGGRAAK SDAGLVTCGS VLKLFNTQHR
60 70 80 90 100
VRLHSHDIKY GSGSGQQSVT GVEASDDANS YWRIRGGTEG ECPRGSPVRC
110 120 130 140 150
GQAVRLTHVL TGKNLHTHHF PSPLTNNQEV SAFGEDGEGD DLDLWTVRCS
160 170 180 190 200
GQHWEREAAV RFQHVGTSVF LSVTGEQYGS PIRGQHEVHG MASASAHNKW
210 220
KAMEGIFIKP SPEAPGGHDE L
Length:221
Mass (Da):23,557
Last modified:October 11, 2005 - v1
Checksum:i79943DE6824B641E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102528 mRNA. Translation: AAI02529.1.
RefSeqiNP_001030400.1. NM_001035323.1.
UniGeneiBt.16378.

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneIDi517962.
KEGGibta:517962.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102528 mRNA. Translation: AAI02529.1.
RefSeqiNP_001030400.1. NM_001035323.1.
UniGeneiBt.16378.

3D structure databases

ProteinModelPortaliQ3T083.
SMRiQ3T083. Positions 31-206.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000000074.

Proteomic databases

PRIDEiQ3T083.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000000074; ENSBTAP00000000074; ENSBTAG00000000067.
GeneIDi517962.
KEGGibta:517962.

Organism-specific databases

CTDi23753.

Phylogenomic databases

eggNOGiNOG136457.
GeneTreeiENSGT00510000046663.
HOGENOMiHOG000236354.
HOVERGENiHBG024385.
InParanoidiQ3T083.
OMAiSGQHWER.
OrthoDBiEOG71VSV4.
TreeFamiTF314557.

Miscellaneous databases

NextBioi20872550.

Family and domain databases

InterProiIPR027005. GlyclTrfase_39_like.
IPR016093. MIR_motif.
[Graphical view]
PANTHERiPTHR10050. PTHR10050. 1 hit.
PfamiPF02815. MIR. 1 hit.
[Graphical view]
SMARTiSM00472. MIR. 3 hits.
[Graphical view]
SUPFAMiSSF82109. SSF82109. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
PS50919. MIR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Crossbred X Angus.
    Tissue: Liver.

Entry informationi

Entry nameiSDF2L_BOVIN
AccessioniPrimary (citable) accession number: Q3T083
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 11, 2005
Last modified: January 7, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.