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Protein

39S ribosomal protein L13, mitochondrial

Gene

MRPL13

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-BTA-5368286. Mitochondrial translation initiation.
R-BTA-5389840. Mitochondrial translation elongation.
R-BTA-5419276. Mitochondrial translation termination.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L13, mitochondrial
Short name:
L13mt
Short name:
MRP-L13
Gene namesi
Name:MRPL13
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 14

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 17817739S ribosomal protein L13, mitochondrialPRO_0000230998Add
BLAST

Proteomic databases

PaxDbiQ3SYS1.
PRIDEiQ3SYS1.

PTM databases

iPTMnetiQ3SYS1.

Interactioni

Subunit structurei

Interacts with OXA1L.1 Publication

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000008903.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FTCelectron microscopy12.10H1-148[»]
ProteinModelPortaliQ3SYS1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ3SYS1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.Curated

Phylogenomic databases

eggNOGiKOG3203. Eukaryota.
COG0102. LUCA.
GeneTreeiENSGT00390000001515.
HOGENOMiHOG000225288.
HOVERGENiHBG036111.
InParanoidiQ3SYS1.
KOiK02871.
OMAiRVWSPPE.
OrthoDBiEOG7R832R.
TreeFamiTF312914.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3SYS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLSRAPQQ WATFARVWYL LDGKMQPPGK LAALASVRLQ GLHKPVYHQL
60 70 80 90 100
SDCGDHVVIM NTRHIAFSGN KWEQKVYSSH TGYPGGFKQV TAAQLHRKDP
110 120 130 140 150
VAIVKLAIYG MLPKNLHRRT LMQRLHLFPD EDIPEDILKN LTEELPQPRK
160 170
VPRRLDEYTQ EEIEAFPRVW SPPEDYRL
Length:178
Mass (Da):20,575
Last modified:October 11, 2005 - v1
Checksum:iBFE755D10DACC589
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC103423 mRNA. Translation: AAI03424.1.
RefSeqiNP_001029977.1. NM_001034805.2.
UniGeneiBt.49122.

Genome annotation databases

EnsembliENSBTAT00000008903; ENSBTAP00000008903; ENSBTAG00000006767.
GeneIDi617901.
KEGGibta:617901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC103423 mRNA. Translation: AAI03424.1.
RefSeqiNP_001029977.1. NM_001034805.2.
UniGeneiBt.49122.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2FTCelectron microscopy12.10H1-148[»]
ProteinModelPortaliQ3SYS1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000008903.

PTM databases

iPTMnetiQ3SYS1.

Proteomic databases

PaxDbiQ3SYS1.
PRIDEiQ3SYS1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000008903; ENSBTAP00000008903; ENSBTAG00000006767.
GeneIDi617901.
KEGGibta:617901.

Organism-specific databases

CTDi28998.

Phylogenomic databases

eggNOGiKOG3203. Eukaryota.
COG0102. LUCA.
GeneTreeiENSGT00390000001515.
HOGENOMiHOG000225288.
HOVERGENiHBG036111.
InParanoidiQ3SYS1.
KOiK02871.
OMAiRVWSPPE.
OrthoDBiEOG7R832R.
TreeFamiTF312914.

Enzyme and pathway databases

ReactomeiR-BTA-5368286. Mitochondrial translation initiation.
R-BTA-5389840. Mitochondrial translation elongation.
R-BTA-5419276. Mitochondrial translation termination.

Miscellaneous databases

EvolutionaryTraceiQ3SYS1.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Crossbred X Angus.
    Tissue: Liver.
  2. "Properties of the C-terminal tail of human mitochondrial inner membrane protein Oxa1L and its interactions with mammalian mitochondrial ribosomes."
    Haque M.E., Elmore K.B., Tripathy A., Koc H., Koc E.C., Spremulli L.L.
    J. Biol. Chem. 285:28353-28362(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH OXA1L, IDENTIFICATION BY MASS SPECTROMETRY.
  3. "A structural model for the large subunit of the mammalian mitochondrial ribosome."
    Mears J.A., Sharma M.R., Gutell R.R., McCook A.S., Richardson P.E., Caulfield T.R., Agrawal R.K., Harvey S.C.
    J. Mol. Biol. 358:193-212(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (12 ANGSTROMS), SUBCELLULAR LOCATION.

Entry informationi

Entry nameiRM13_BOVIN
AccessioniPrimary (citable) accession number: Q3SYS1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.