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Q3SVS1

- Q3SVS1_NITWN

UniProt

Q3SVS1 - Q3SVS1_NITWN

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Protein
Submitted name: ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
Gene
Nwi_0353
Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-359-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Nwi_0353Imported
OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)Imported
Taxonomic identifieri323098 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000002531: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323098.Nwi_0353.

Structurei

3D structure databases

ProteinModelPortaliQ3SVS1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3SVS1-1 [UniParc]FASTAAdd to Basket

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MPSRKLSTYR NKRDFSKTAE PSGGARIAPA RQRRFVIQKH DATRLHYDFR    50
LEYDGVFKSW AVTRGPSLDP AVKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
GTVAIWDRGY WYADDPAKGL AKGDLKFALM GEKLRGEWVL VRMKNDRSGG 150
KRTNWLLIKH RDDYARPGDG EDVLKQDRSV ASNRTLEQIA EGKGKAPEPF 200
MMTRRIAGSD AVWDSNKGVA ARARARAERR PAKASAQPAS TGKTTLKESR 250
PQTARAHAIK SKMPDFAGLQ LCEAATRPPS ADSWVHEIKL DGYRIQMRIE 300
SGAVTLRTRK GLDWTDRFPA IAKAAAKLPD ALIDGEIVAL NANGDPDFPA 350
MQAALAEGRT DALVYFAFDL LFTEGEDLRP LPLLARKDQL RKLLGRSAKS 400
NRATIRYVEH FDVDGEQMLA TARESGLEGI ISKRIDAAYR AGRRGSWLKT 450
KSRPGHEVVI GGWKTTGDKF RSLMAGVHNG DRLVYTGIVG TGYGRDTVKR 500
IMPALKAAAA SKSPFSGKNA PAGGRDVHWL KPELVAEIEF AGWTDDGMVR 550
QAAFKGLRAD KPAREVTAEM PTRAAALKLD KARPKATRPG TRAAAAARSD 600
PTTSRQSRTS AARDRSTVMG VAISHPDKAL WPDAGDKRPV TKHDLAAYME 650
AVGGWMIGHI RGRPCSIVRA PDGIHSETFF QRHAMPGLSD LVTQAKVSDD 700
RKPYLQIDRV EALAAVAQIG GIELHPWNCA PDEYTVPGRL VFDLDPAPDV 750
AFPDVIAAAR EMRQRLEALK LESFCKTTGG KGLHVVTPLA IGPKDGLNWK 800
QAKMFAQAVC EQMAADAPDK YLINMSKKQR EGKIFLDYLR NDTKSTAVAP 850
LSPRARPGAT VSMPLNWAQV KTGLDPKRFT LRTAPDLLKK SKAWADYDSA 900
ARPLAAAIGR LVR 913
Length:913
Mass (Da):100,262
Last modified:October 11, 2005 - v1
Checksum:i5A654D7B1950E9A8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000115 Genomic DNA. Translation: ABA03620.1.
RefSeqiYP_316972.1. NC_007406.1.

Genome annotation databases

EnsemblBacteriaiABA03620; ABA03620; Nwi_0353.
GeneIDi3674907.
KEGGinwi:Nwi_0353.
PATRICi22697074. VBINitWin102302_0387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000115 Genomic DNA. Translation: ABA03620.1 .
RefSeqi YP_316972.1. NC_007406.1.

3D structure databases

ProteinModelPortali Q3SVS1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323098.Nwi_0353.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA03620 ; ABA03620 ; Nwi_0353 .
GeneIDi 3674907.
KEGGi nwi:Nwi_0353.
PATRICi 22697074. VBINitWin102302_0387.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NWIN323098:GJEG-359-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
    Starkenburg S.R., Chain P.S., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
    Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nb-255 / ATCC 25391.

Entry informationi

Entry nameiQ3SVS1_NITWN
AccessioniPrimary (citable) accession number: Q3SVS1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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