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Q3SVS1

- Q3SVS1_NITWN

UniProt

Q3SVS1 - Q3SVS1_NITWN

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Nwi_0353

Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNWIN323098:GJEG-359-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Nwi_0353Imported
    OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)Imported
    Taxonomic identifieri323098 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
    ProteomesiUP000002531: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi323098.Nwi_0353.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3SVS1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3SVS1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPSRKLSTYR NKRDFSKTAE PSGGARIAPA RQRRFVIQKH DATRLHYDFR    50
    LEYDGVFKSW AVTRGPSLDP AVKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVAIWDRGY WYADDPAKGL AKGDLKFALM GEKLRGEWVL VRMKNDRSGG 150
    KRTNWLLIKH RDDYARPGDG EDVLKQDRSV ASNRTLEQIA EGKGKAPEPF 200
    MMTRRIAGSD AVWDSNKGVA ARARARAERR PAKASAQPAS TGKTTLKESR 250
    PQTARAHAIK SKMPDFAGLQ LCEAATRPPS ADSWVHEIKL DGYRIQMRIE 300
    SGAVTLRTRK GLDWTDRFPA IAKAAAKLPD ALIDGEIVAL NANGDPDFPA 350
    MQAALAEGRT DALVYFAFDL LFTEGEDLRP LPLLARKDQL RKLLGRSAKS 400
    NRATIRYVEH FDVDGEQMLA TARESGLEGI ISKRIDAAYR AGRRGSWLKT 450
    KSRPGHEVVI GGWKTTGDKF RSLMAGVHNG DRLVYTGIVG TGYGRDTVKR 500
    IMPALKAAAA SKSPFSGKNA PAGGRDVHWL KPELVAEIEF AGWTDDGMVR 550
    QAAFKGLRAD KPAREVTAEM PTRAAALKLD KARPKATRPG TRAAAAARSD 600
    PTTSRQSRTS AARDRSTVMG VAISHPDKAL WPDAGDKRPV TKHDLAAYME 650
    AVGGWMIGHI RGRPCSIVRA PDGIHSETFF QRHAMPGLSD LVTQAKVSDD 700
    RKPYLQIDRV EALAAVAQIG GIELHPWNCA PDEYTVPGRL VFDLDPAPDV 750
    AFPDVIAAAR EMRQRLEALK LESFCKTTGG KGLHVVTPLA IGPKDGLNWK 800
    QAKMFAQAVC EQMAADAPDK YLINMSKKQR EGKIFLDYLR NDTKSTAVAP 850
    LSPRARPGAT VSMPLNWAQV KTGLDPKRFT LRTAPDLLKK SKAWADYDSA 900
    ARPLAAAIGR LVR 913
    Length:913
    Mass (Da):100,262
    Last modified:October 11, 2005 - v1
    Checksum:i5A654D7B1950E9A8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000115 Genomic DNA. Translation: ABA03620.1.
    RefSeqiYP_316972.1. NC_007406.1.

    Genome annotation databases

    EnsemblBacteriaiABA03620; ABA03620; Nwi_0353.
    GeneIDi3674907.
    KEGGinwi:Nwi_0353.
    PATRICi22697074. VBINitWin102302_0387.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000115 Genomic DNA. Translation: ABA03620.1 .
    RefSeqi YP_316972.1. NC_007406.1.

    3D structure databases

    ProteinModelPortali Q3SVS1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 323098.Nwi_0353.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA03620 ; ABA03620 ; Nwi_0353 .
    GeneIDi 3674907.
    KEGGi nwi:Nwi_0353.
    PATRICi 22697074. VBINitWin102302_0387.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci NWIN323098:GJEG-359-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
      Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
      Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nb-255 / ATCC 25391Imported.

    Entry informationi

    Entry nameiQ3SVS1_NITWN
    AccessioniPrimary (citable) accession number: Q3SVS1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3