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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Nwi_0353

Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-359-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Nwi_0353Imported
OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)Imported
Taxonomic identifieri323098 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000002531: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323098.Nwi_0353.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3SVS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSRKLSTYR NKRDFSKTAE PSGGARIAPA RQRRFVIQKH DATRLHYDFR
60 70 80 90 100
LEYDGVFKSW AVTRGPSLDP AVKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVAIWDRGY WYADDPAKGL AKGDLKFALM GEKLRGEWVL VRMKNDRSGG
160 170 180 190 200
KRTNWLLIKH RDDYARPGDG EDVLKQDRSV ASNRTLEQIA EGKGKAPEPF
210 220 230 240 250
MMTRRIAGSD AVWDSNKGVA ARARARAERR PAKASAQPAS TGKTTLKESR
260 270 280 290 300
PQTARAHAIK SKMPDFAGLQ LCEAATRPPS ADSWVHEIKL DGYRIQMRIE
310 320 330 340 350
SGAVTLRTRK GLDWTDRFPA IAKAAAKLPD ALIDGEIVAL NANGDPDFPA
360 370 380 390 400
MQAALAEGRT DALVYFAFDL LFTEGEDLRP LPLLARKDQL RKLLGRSAKS
410 420 430 440 450
NRATIRYVEH FDVDGEQMLA TARESGLEGI ISKRIDAAYR AGRRGSWLKT
460 470 480 490 500
KSRPGHEVVI GGWKTTGDKF RSLMAGVHNG DRLVYTGIVG TGYGRDTVKR
510 520 530 540 550
IMPALKAAAA SKSPFSGKNA PAGGRDVHWL KPELVAEIEF AGWTDDGMVR
560 570 580 590 600
QAAFKGLRAD KPAREVTAEM PTRAAALKLD KARPKATRPG TRAAAAARSD
610 620 630 640 650
PTTSRQSRTS AARDRSTVMG VAISHPDKAL WPDAGDKRPV TKHDLAAYME
660 670 680 690 700
AVGGWMIGHI RGRPCSIVRA PDGIHSETFF QRHAMPGLSD LVTQAKVSDD
710 720 730 740 750
RKPYLQIDRV EALAAVAQIG GIELHPWNCA PDEYTVPGRL VFDLDPAPDV
760 770 780 790 800
AFPDVIAAAR EMRQRLEALK LESFCKTTGG KGLHVVTPLA IGPKDGLNWK
810 820 830 840 850
QAKMFAQAVC EQMAADAPDK YLINMSKKQR EGKIFLDYLR NDTKSTAVAP
860 870 880 890 900
LSPRARPGAT VSMPLNWAQV KTGLDPKRFT LRTAPDLLKK SKAWADYDSA
910
ARPLAAAIGR LVR
Length:913
Mass (Da):100,262
Last modified:October 11, 2005 - v1
Checksum:i5A654D7B1950E9A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000115 Genomic DNA. Translation: ABA03620.1.
RefSeqiWP_011313685.1. NC_007406.1.
YP_316972.1. NC_007406.1.

Genome annotation databases

EnsemblBacteriaiABA03620; ABA03620; Nwi_0353.
GeneIDi3674907.
KEGGinwi:Nwi_0353.
PATRICi22697074. VBINitWin102302_0387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000115 Genomic DNA. Translation: ABA03620.1.
RefSeqiWP_011313685.1. NC_007406.1.
YP_316972.1. NC_007406.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323098.Nwi_0353.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA03620; ABA03620; Nwi_0353.
GeneIDi3674907.
KEGGinwi:Nwi_0353.
PATRICi22697074. VBINitWin102302_0387.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-359-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
    Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
    Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nb-255 / ATCC 25391Imported.

Entry informationi

Entry nameiQ3SVS1_NITWN
AccessioniPrimary (citable) accession number: Q3SVS1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 4, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.