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Q3SVS1 (Q3SVS1_NITWN) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ABA03620.1
Gene names
Ordered Locus Names:Nwi_0353 EMBL ABA03620.1
OrganismNitrobacter winogradskyi (strain Nb-255 / ATCC 25391) [Complete proteome] [HAMAP] EMBL ABA03620.1
Taxonomic identifier323098 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter

Protein attributes

Sequence length913 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABA03620.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3SVS1 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 5A654D7B1950E9A8

FASTA913100,262
        10         20         30         40         50         60 
MPSRKLSTYR NKRDFSKTAE PSGGARIAPA RQRRFVIQKH DATRLHYDFR LEYDGVFKSW 

        70         80         90        100        110        120 
AVTRGPSLDP AVKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVAIWDRGY WYADDPAKGL 

       130        140        150        160        170        180 
AKGDLKFALM GEKLRGEWVL VRMKNDRSGG KRTNWLLIKH RDDYARPGDG EDVLKQDRSV 

       190        200        210        220        230        240 
ASNRTLEQIA EGKGKAPEPF MMTRRIAGSD AVWDSNKGVA ARARARAERR PAKASAQPAS 

       250        260        270        280        290        300 
TGKTTLKESR PQTARAHAIK SKMPDFAGLQ LCEAATRPPS ADSWVHEIKL DGYRIQMRIE 

       310        320        330        340        350        360 
SGAVTLRTRK GLDWTDRFPA IAKAAAKLPD ALIDGEIVAL NANGDPDFPA MQAALAEGRT 

       370        380        390        400        410        420 
DALVYFAFDL LFTEGEDLRP LPLLARKDQL RKLLGRSAKS NRATIRYVEH FDVDGEQMLA 

       430        440        450        460        470        480 
TARESGLEGI ISKRIDAAYR AGRRGSWLKT KSRPGHEVVI GGWKTTGDKF RSLMAGVHNG 

       490        500        510        520        530        540 
DRLVYTGIVG TGYGRDTVKR IMPALKAAAA SKSPFSGKNA PAGGRDVHWL KPELVAEIEF 

       550        560        570        580        590        600 
AGWTDDGMVR QAAFKGLRAD KPAREVTAEM PTRAAALKLD KARPKATRPG TRAAAAARSD 

       610        620        630        640        650        660 
PTTSRQSRTS AARDRSTVMG VAISHPDKAL WPDAGDKRPV TKHDLAAYME AVGGWMIGHI 

       670        680        690        700        710        720 
RGRPCSIVRA PDGIHSETFF QRHAMPGLSD LVTQAKVSDD RKPYLQIDRV EALAAVAQIG 

       730        740        750        760        770        780 
GIELHPWNCA PDEYTVPGRL VFDLDPAPDV AFPDVIAAAR EMRQRLEALK LESFCKTTGG 

       790        800        810        820        830        840 
KGLHVVTPLA IGPKDGLNWK QAKMFAQAVC EQMAADAPDK YLINMSKKQR EGKIFLDYLR 

       850        860        870        880        890        900 
NDTKSTAVAP LSPRARPGAT VSMPLNWAQV KTGLDPKRFT LRTAPDLLKK SKAWADYDSA 

       910 
ARPLAAAIGR LVR 

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References

[1]"Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
Starkenburg S.R., Chain P.S., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nb-255 / ATCC 25391.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000115 Genomic DNA. Translation: ABA03620.1.
RefSeqYP_316972.1. NC_007406.1.

3D structure databases

ProteinModelPortalQ3SVS1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323098.Nwi_0353.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABA03620; ABA03620; Nwi_0353.
GeneID3674907.
KEGGnwi:Nwi_0353.
PATRIC22697074. VBINitWin102302_0387.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycNWIN323098:GJEG-359-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3SVS1_NITWN
AccessionPrimary (citable) accession number: Q3SVS1
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)