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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nwi_0462

Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-471-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Nwi_0462Imported
OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)Imported
Taxonomic identifieri323098 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000002531 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323098.Nwi_0462.

Structurei

3D structure databases

ProteinModelPortaliQ3SVG2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3SVG2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LAYEPGRNNK LRLMTAYFRE TPDPDRGYAL SALTGALSFK
60 70 80 90 100
YAKSGLVRDL IAARADPVLF AFSYDYVGDL SETVALMWPQ QHPPDASSVL
110 120 130 140 150
SAARGSGTGK ATGTGHVRHW PSPTLTDVVT TLRTLGKAEL PAQLARWLDQ
160 170 180 190 200
LDETGRWALL KLVTGAMRIG VSARLAKTAV AALGSRDAHD VELIWPGLAP
210 220 230 240 250
PYPDLFAWLE GRGDKPVNRA PAPFRPVMLA HAIEDADFAR LDATDFTAEW
260 270 280 290 300
KWDGIRVQAV RGRDEHGNVE TRLYSRTGED ITHSFPDLLP SLRREGFAEG
310 320 330 340 350
WLNDSREPVR GFRPRAFAID GELLVVRDGR VQSFNVLQQR LNRKAVTPRL
360 370 380 390 400
MKEFPVRLRA YDLLADGDND LRELPFEDRR RRLVDFIAAL DDPRIDLSPQ
410 420 430 440 450
VSFATWSDLA AIRADPAAAG ADAEAVEGIM LKRRDAPYMP GRPKGLWWKW
460 470 480 490 500
KRDPHVIDAV LMYAQRGHGR RSSYYSDYTF GVWTAGEEGE RLVPVGKAYF
510 520 530 540 550
GFTDEELLRI DRFVRRNTTE SFGPVRHVLH EPDQGLVLEI AFEGLQRSAR
560 570 580 590
HKSGVAMRFP RINRLRWDKP PREADRLETL ERMLASEATR SNGR
Length:594
Mass (Da):67,000
Last modified:October 11, 2005 - v1
Checksum:i03370C996FD0DCF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000115 Genomic DNA. Translation: ABA03729.1.
RefSeqiYP_317081.1. NC_007406.1.

Genome annotation databases

EnsemblBacteriaiABA03729; ABA03729; Nwi_0462.
KEGGinwi:Nwi_0462.
PATRICi22697324. VBINitWin102302_0510.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000115 Genomic DNA. Translation: ABA03729.1.
RefSeqiYP_317081.1. NC_007406.1.

3D structure databases

ProteinModelPortaliQ3SVG2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323098.Nwi_0462.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA03729; ABA03729; Nwi_0462.
KEGGinwi:Nwi_0462.
PATRICi22697324. VBINitWin102302_0510.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-471-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
    Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
    Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nb-255 / ATCC 25391Imported.

Entry informationi

Entry nameiQ3SVG2_NITWN
AccessioniPrimary (citable) accession number: Q3SVG2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 1, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.