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Q3SVG2 (Q3SVG2_NITWN) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL ABA03729.1
EC=6.5.1.1 EMBL ABA03729.1
Gene names
Ordered Locus Names:Nwi_0462
OrganismNitrobacter winogradskyi (strain Nb-255 / ATCC 25391) [Complete proteome] [HAMAP] EMBL ABA03729.1
Taxonomic identifier323098 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Nitrobacter ›

Protein attributes

Sequence length594 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABA03729.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3SVG2 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 03370C996FD0DCF4

FASTA59467,000
        10         20         30         40         50         60 
MNRFAELLDR LAYEPGRNNK LRLMTAYFRE TPDPDRGYAL SALTGALSFK YAKSGLVRDL 

        70         80         90        100        110        120 
IAARADPVLF AFSYDYVGDL SETVALMWPQ QHPPDASSVL SAARGSGTGK ATGTGHVRHW 

       130        140        150        160        170        180 
PSPTLTDVVT TLRTLGKAEL PAQLARWLDQ LDETGRWALL KLVTGAMRIG VSARLAKTAV 

       190        200        210        220        230        240 
AALGSRDAHD VELIWPGLAP PYPDLFAWLE GRGDKPVNRA PAPFRPVMLA HAIEDADFAR 

       250        260        270        280        290        300 
LDATDFTAEW KWDGIRVQAV RGRDEHGNVE TRLYSRTGED ITHSFPDLLP SLRREGFAEG 

       310        320        330        340        350        360 
WLNDSREPVR GFRPRAFAID GELLVVRDGR VQSFNVLQQR LNRKAVTPRL MKEFPVRLRA 

       370        380        390        400        410        420 
YDLLADGDND LRELPFEDRR RRLVDFIAAL DDPRIDLSPQ VSFATWSDLA AIRADPAAAG 

       430        440        450        460        470        480 
ADAEAVEGIM LKRRDAPYMP GRPKGLWWKW KRDPHVIDAV LMYAQRGHGR RSSYYSDYTF 

       490        500        510        520        530        540 
GVWTAGEEGE RLVPVGKAYF GFTDEELLRI DRFVRRNTTE SFGPVRHVLH EPDQGLVLEI 

       550        560        570        580        590 
AFEGLQRSAR HKSGVAMRFP RINRLRWDKP PREADRLETL ERMLASEATR SNGR

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References

[1]"Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nb-255 / ATCC 25391.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000115 Genomic DNA. Translation: ABA03729.1.
RefSeqYP_317081.1. NC_007406.1.

3D structure databases

ProteinModelPortalQ3SVG2.
ModBaseSearch...

Protein-protein interaction databases

STRING323098.Nwi_0462.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABA03729; ABA03729; Nwi_0462.
GeneID3676297.
KEGGnwi:Nwi_0462.
PATRIC22697324. VBINitWin102302_0510.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAAYDLLEW.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycNWIN323098:GJEG-471-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3SVG2_NITWN
AccessionPrimary (citable) accession number: Q3SVG2
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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