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Q3SVG2

- Q3SVG2_NITWN

UniProt

Q3SVG2 - Q3SVG2_NITWN

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nwi_0462

Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNWIN323098:GJEG-471-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Nwi_0462Imported
    OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)Imported
    Taxonomic identifieri323098 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
    ProteomesiUP000002531: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi323098.Nwi_0462.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3SVG2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3SVG2-1 [UniParc]FASTAAdd to Basket

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    MNRFAELLDR LAYEPGRNNK LRLMTAYFRE TPDPDRGYAL SALTGALSFK    50
    YAKSGLVRDL IAARADPVLF AFSYDYVGDL SETVALMWPQ QHPPDASSVL 100
    SAARGSGTGK ATGTGHVRHW PSPTLTDVVT TLRTLGKAEL PAQLARWLDQ 150
    LDETGRWALL KLVTGAMRIG VSARLAKTAV AALGSRDAHD VELIWPGLAP 200
    PYPDLFAWLE GRGDKPVNRA PAPFRPVMLA HAIEDADFAR LDATDFTAEW 250
    KWDGIRVQAV RGRDEHGNVE TRLYSRTGED ITHSFPDLLP SLRREGFAEG 300
    WLNDSREPVR GFRPRAFAID GELLVVRDGR VQSFNVLQQR LNRKAVTPRL 350
    MKEFPVRLRA YDLLADGDND LRELPFEDRR RRLVDFIAAL DDPRIDLSPQ 400
    VSFATWSDLA AIRADPAAAG ADAEAVEGIM LKRRDAPYMP GRPKGLWWKW 450
    KRDPHVIDAV LMYAQRGHGR RSSYYSDYTF GVWTAGEEGE RLVPVGKAYF 500
    GFTDEELLRI DRFVRRNTTE SFGPVRHVLH EPDQGLVLEI AFEGLQRSAR 550
    HKSGVAMRFP RINRLRWDKP PREADRLETL ERMLASEATR SNGR 594
    Length:594
    Mass (Da):67,000
    Last modified:October 11, 2005 - v1
    Checksum:i03370C996FD0DCF4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000115 Genomic DNA. Translation: ABA03729.1.
    RefSeqiYP_317081.1. NC_007406.1.

    Genome annotation databases

    EnsemblBacteriaiABA03729; ABA03729; Nwi_0462.
    GeneIDi3676297.
    KEGGinwi:Nwi_0462.
    PATRICi22697324. VBINitWin102302_0510.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000115 Genomic DNA. Translation: ABA03729.1 .
    RefSeqi YP_317081.1. NC_007406.1.

    3D structure databases

    ProteinModelPortali Q3SVG2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 323098.Nwi_0462.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA03729 ; ABA03729 ; Nwi_0462 .
    GeneIDi 3676297.
    KEGGi nwi:Nwi_0462.
    PATRICi 22697324. VBINitWin102302_0510.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci NWIN323098:GJEG-471-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
      Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
      Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nb-255 / ATCC 25391Imported.

    Entry informationi

    Entry nameiQ3SVG2_NITWN
    AccessioniPrimary (citable) accession number: Q3SVG2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3