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Q3STC2

- GLGB_NITWN

UniProt

Q3STC2 - GLGB_NITWN

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Protein
1,4-alpha-glucan branching enzyme GlgB
Gene
glgB, Nwi_1207
Organism
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei398 – 3981Nucleophile By similarity
Active sitei451 – 4511Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciNWIN323098:GJEG-1229-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:Nwi_1207
OrganismiNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
Taxonomic identifieri323098 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000002531: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7167161,4-alpha-glucan branching enzyme GlgBUniRule annotation
PRO_0000260670Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi323098.Nwi_1207.

Structurei

3D structure databases

ProteinModelPortaliQ3STC2.
SMRiQ3STC2. Positions 111-715.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiHERCPHA.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3STC2-1 [UniParc]FASTAAdd to Basket

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MTELSSEARA IVEGRHSDPF HYLGCHRETD RKVVRVYLPD ASEVRLIDET    50
GEEIILTRIH DAGLFLGDLP DRAERYRLRA RYGADLVELE DPYRFPPILD 100
DFDLYLLGEG THQRIYDKLG AHPMAMEGVD GAGFVVLAPN ARAVAVVGDF 150
NFWDRRRHPM RVRGNGYWEL FIPGARAGDR YKFAITAQDG SLLPLKSDPM 200
AFAAEVRPNT ASIIFDQARL PRPTPLAATI NARGVPISIY EVHLGSWRRS 250
DGNRWLSYRE LAETLPDYVR ELGFTHIELM PVNEHPFDGS WGYQPTGLYA 300
PTSRFGSPED FAHLIDACHR EGLGLLLDWV PGHFPDDPHG LGRFDGTSLY 350
EHANPLQGRH LDWDTLIYNY GRTEVVNFLV ANALFWLDRY GIDGLRVDAV 400
ASMLYLDYSR PEGGWIPNKH GGRENLEAIE FLRRFNREVF GRFPNATTVA 450
EESTAWPQVS RPIEFGGLGF GYKWNMGWMH DTLSYFEKDP IHRKHHHDQI 500
LFGLHYAFSE NFILPLSHDE VVHGKRSILG RMPGDDWQRF ANLRAYYAFM 550
FGHPGKKLMF MGAEFGQERE WNHDHALDWH LLDQARHQGV QAVVRDLNKL 600
YREVPALHEF DCDPAGFEWI VANDADHSVF AWMRKGASGR ARCLVIANLT 650
PTIHRDYRVR VPFTGRWREA LNTDSAHYGG SNVGNDGAIE TSGEIIPELV 700
LTLPPLGVIF LVPEAA 716
Length:716
Mass (Da):81,516
Last modified:October 11, 2005 - v1
Checksum:iA7E754D1FF133126
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000115 Genomic DNA. Translation: ABA04469.1.
RefSeqiWP_011314498.1. NC_007406.1.
YP_317821.1. NC_007406.1.

Genome annotation databases

EnsemblBacteriaiABA04469; ABA04469; Nwi_1207.
GeneIDi3675666.
KEGGinwi:Nwi_1207.
PATRICi22699034. VBINitWin102302_1352.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000115 Genomic DNA. Translation: ABA04469.1 .
RefSeqi WP_011314498.1. NC_007406.1.
YP_317821.1. NC_007406.1.

3D structure databases

ProteinModelPortali Q3STC2.
SMRi Q3STC2. Positions 111-715.
ModBasei Search...

Protein-protein interaction databases

STRINGi 323098.Nwi_1207.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA04469 ; ABA04469 ; Nwi_1207 .
GeneIDi 3675666.
KEGGi nwi:Nwi_1207.
PATRICi 22699034. VBINitWin102302_1352.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi HERCPHA.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci NWIN323098:GJEG-1229-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255."
    Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J.
    Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nb-255 / ATCC 25391.

Entry informationi

Entry nameiGLGB_NITWN
AccessioniPrimary (citable) accession number: Q3STC2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: October 11, 2005
Last modified: September 3, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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