Q3SS27 (Q3SS27_NITWN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABA04914.1
EC=5.99.1.3 EMBL ABA04914.1

Gene names

Ordered Locus Names:

Nwi_1653

Organism

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) [Complete proteome] [HAMAP] EMBL ABA04914.1

Taxonomic identifier

323098 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Nitrobacter

Protein attributes

Sequence length	685 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3SS27 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: 73BE78425C56BE96	FASTA	685	74,922
	10 20 30 40 50 60 MVKSLKSNIK KKQADDLFAA SETKGRSSAR APGRASGAEA DYTAADIEVL EGLEPVRRRP 70 80 90 100 110 120 GMYIGGTDEK ALHHLFAEVI DNAMDEALAG HATFIVVELA ADGFLTVTDN GRGIPVDPHP 130 140 150 160 170 180 KFPKKSALEV IMCTLHSGGK FDSKVYETSG GLHGVGVSVV NALSSHLEVE VARSQNLYRM 190 200 210 220 230 240 TFERGHPKGK LEDLGRIANR RGTTIRFKPD TEIFGAKAAF KPQRLFKMTR SKAYLFGGVE 250 260 270 280 290 300 IRWRCAPELL KGLEDLPPEA TFHFPGGLKD YLAAAIHKDT LVHPDIFSGR SGRNGAHGAC 310 320 330 340 350 360 EWAVAWTADA DGFLSSYCNT VPTPDGGTHE SGLRSALLRG LKDHAERVGQ GKRAGSITSE 370 380 390 400 410 420 DVMVGAAVML SVFVREPEFQ GQTKDRLATA EASRIVEQAI KDPFDHWLSG NPAQANRLLD 430 440 450 460 470 480 FVIERADERL RRRAEKETSR KSAVKKLRLP GKLADCTNTA TEGSELFIVE GDSAGGSAKQ 490 500 510 520 530 540 ARDRKTQAVL PLRGKILNVV SATRDKVTAN AQLADLIQAL GCGTGTNYRE EDLRYSRVII 550 560 570 580 590 600 MTDADVDGAH IASLLITFFY RQMPRLIDEG HLYLAVPPLY RLTHGSKTVY ARDEAHKDAL 610 620 630 640 650 660 LKSEFNANAK VDVGRFKGLG EMMPAQLKET TMDPAKRTML RVMLLAEDRE DTADSVERLM 670 680 GTKAEARFAF ISDKAVFASE DMLDV

References

[1]

"Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255." Starkenburg S.R., Chain P.S.G., Sayavedra-Soto L.A., Hauser L., Land M.L., Larimer F.W., Malfatti S.A., Klotz M.G., Bottomley P.J., Arp D.J., Hickey W.J. Appl. Environ. Microbiol. 72:2050-2063(2006) [PubMed: 16517654] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000115 Genomic DNA. Translation: ABA04914.1.
RefSeq	YP_318266.1. NC_007406.1.
3D structure databases
ProteinModelPortal	Q3SS27.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3SS27.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3675388.
GenomeReviews	Gene locus Nwi_1653 in contig CP000115_GR.
KEGG	nwi:Nwi_1653.
NMPDR	fig|323098.3.peg.1254.
PATRIC	22700038. VBINitWin102302_1844.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
PhylomeDB	Q3SS27.
ProtClustDB	PRK05559.
Enzyme and pathway databases
BioCyc	NWIN323098:NWI_1653-MONOMER.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3SS27_NITWN

Accession

Primary (citable) accession number: Q3SS27

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	January 25, 2012
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)