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Q3SKL4 (Q3SKL4_THIDA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Tbd_0812 EMBL AAZ96765.1
OrganismThiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ96765.1
Taxonomic identifier292415 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus

Protein attributes

Sequence length306 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AAZ96765.1
   Molecular functionLigase EMBL AAZ96765.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4646 Potential EMBL AAZ96765.1
Chain47 – 306260 Potential EMBL AAZ96765.1
PRO_5000103304

Sequences

Sequence LengthMass (Da)Tools
Q3SKL4 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 90B2C0607DBE287D

FASTA30633,813
        10         20         30         40         50         60 
MARRLSRPAT VRPETVRPAR VEGLKRVAAA LALASALCWP HAARTEAPPA APAMLLAKVY 

        70         80         90        100        110        120 
AADVDVTQYW VSEKFDGVRA QWDGHVLRFR GGGLAPAPAW FTADFPRVPL DGELWIARDA 

       130        140        150        160        170        180 
FDALSGTVRK APPVDAEWRR VRYLVFELPG APGDFSARVG QMREVIEQAA VPWLEAVAQT 

       190        200        210        220        230        240 
RVASREDLMQ RLDAEVRAGG EGLMLHRADA PYLTGRSDAL LKLKPWLDAE AIVVGYVPGK 

       250        260        270        280        290        300 
GKYAGMTGAL RMETPDGKRF RLGSGLSDAL RRQPPPVGTR ITYRYTALTK NGMPRFPRYL 


RVREDF 

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References

[1]"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25259 EMBL AAZ96765.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000116 Genomic DNA. Translation: AAZ96765.1.
RefSeqYP_314570.1. NC_007404.1.

3D structure databases

ProteinModelPortalQ3SKL4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING292415.Tbd_0812.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ96765; AAZ96765; Tbd_0812.
GeneID3673509.
KEGGtbd:Tbd_0812.
PATRIC23967793. VBIThiDen82923_0811.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycTDEN292415:GHWG-833-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3SKL4_THIDA
AccessionPrimary (citable) accession number: Q3SKL4
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 11, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)