Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q3SKL4

- Q3SKL4_THIDA

UniProt

Q3SKL4 - Q3SKL4_THIDA

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

Tbd_0812

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-833-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:Tbd_0812Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
ProteomesiUP000008291: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4646 PotentialImportedAdd
BLAST
Chaini47 – 306260 PotentialImportedPRO_5000103304Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_0812.

Structurei

3D structure databases

ProteinModelPortaliQ3SKL4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3SKL4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARRLSRPAT VRPETVRPAR VEGLKRVAAA LALASALCWP HAARTEAPPA
60 70 80 90 100
APAMLLAKVY AADVDVTQYW VSEKFDGVRA QWDGHVLRFR GGGLAPAPAW
110 120 130 140 150
FTADFPRVPL DGELWIARDA FDALSGTVRK APPVDAEWRR VRYLVFELPG
160 170 180 190 200
APGDFSARVG QMREVIEQAA VPWLEAVAQT RVASREDLMQ RLDAEVRAGG
210 220 230 240 250
EGLMLHRADA PYLTGRSDAL LKLKPWLDAE AIVVGYVPGK GKYAGMTGAL
260 270 280 290 300
RMETPDGKRF RLGSGLSDAL RRQPPPVGTR ITYRYTALTK NGMPRFPRYL

RVREDF
Length:306
Mass (Da):33,813
Last modified:October 11, 2005 - v1
Checksum:i90B2C0607DBE287D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ96765.1.
RefSeqiWP_011311324.1. NC_007404.1.
YP_314570.1. NC_007404.1.

Genome annotation databases

EnsemblBacteriaiAAZ96765; AAZ96765; Tbd_0812.
GeneIDi3673509.
KEGGitbd:Tbd_0812.
PATRICi23967793. VBIThiDen82923_0811.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ96765.1 .
RefSeqi WP_011311324.1. NC_007404.1.
YP_314570.1. NC_007404.1.

3D structure databases

ProteinModelPortali Q3SKL4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 292415.Tbd_0812.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAZ96765 ; AAZ96765 ; Tbd_0812 .
GeneIDi 3673509.
KEGGi tbd:Tbd_0812.
PATRICi 23967793. VBIThiDen82923_0811.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci TDEN292415:GHWG-833-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
    Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
    J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25259Imported.

Entry informationi

Entry nameiQ3SKL4_THIDA
AccessioniPrimary (citable) accession number: Q3SKL4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: October 29, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3