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Q3SKL4

- Q3SKL4_THIDA

UniProt

Q3SKL4 - Q3SKL4_THIDA

Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

Tbd_0812

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 62 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTDEN292415:GHWG-833-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependentImported
    Gene namesi
    Ordered Locus Names:Tbd_0812Imported
    OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
    Taxonomic identifieri292415 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
    ProteomesiUP000008291: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 4646 PotentialImportedAdd
    BLAST
    Chaini47 – 306260 PotentialImportedPRO_5000103304Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi292415.Tbd_0812.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3SKL4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q3SKL4-1 [UniParc]FASTAAdd to Basket

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    MARRLSRPAT VRPETVRPAR VEGLKRVAAA LALASALCWP HAARTEAPPA    50
    APAMLLAKVY AADVDVTQYW VSEKFDGVRA QWDGHVLRFR GGGLAPAPAW 100
    FTADFPRVPL DGELWIARDA FDALSGTVRK APPVDAEWRR VRYLVFELPG 150
    APGDFSARVG QMREVIEQAA VPWLEAVAQT RVASREDLMQ RLDAEVRAGG 200
    EGLMLHRADA PYLTGRSDAL LKLKPWLDAE AIVVGYVPGK GKYAGMTGAL 250
    RMETPDGKRF RLGSGLSDAL RRQPPPVGTR ITYRYTALTK NGMPRFPRYL 300
    RVREDF 306
    Length:306
    Mass (Da):33,813
    Last modified:October 11, 2005 - v1
    Checksum:i90B2C0607DBE287D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ96765.1.
    RefSeqiWP_011311324.1. NC_007404.1.
    YP_314570.1. NC_007404.1.

    Genome annotation databases

    EnsemblBacteriaiAAZ96765; AAZ96765; Tbd_0812.
    GeneIDi3673509.
    KEGGitbd:Tbd_0812.
    PATRICi23967793. VBIThiDen82923_0811.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ96765.1 .
    RefSeqi WP_011311324.1. NC_007404.1.
    YP_314570.1. NC_007404.1.

    3D structure databases

    ProteinModelPortali Q3SKL4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 292415.Tbd_0812.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAZ96765 ; AAZ96765 ; Tbd_0812 .
    GeneIDi 3673509.
    KEGGi tbd:Tbd_0812.
    PATRICi 23967793. VBIThiDen82923_0811.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci TDEN292415:GHWG-833-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
      Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
      J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25259Imported.

    Entry informationi

    Entry nameiQ3SKL4_THIDA
    AccessioniPrimary (citable) accession number: Q3SKL4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 62 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3