Q3SKL4 (Q3SKL4_THIDA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent EMBL AAZ96765.1

Gene names

Ordered Locus Names:

Tbd_0812

Organism

Thiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ96765.1

Taxonomic identifier

292415 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Hydrogenophilales › Hydrogenophilaceae › Thiobacillus › Thiobacillus denitrificans

Protein attributes

Sequence length	306 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL AAZ96765.1
Molecular function	Ligase EMBL AAZ96765.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 46	46	Potential EMBL AAZ96765.1
	Chain	47 – 306	260	Potential EMBL AAZ96765.1		PRO_5000103304

Sequences

	Sequence		Length	Mass (Da)
	Q3SKL4 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: 90B2C0607DBE287D	FASTA	306	33,813
	10 20 30 40 50 60 MARRLSRPAT VRPETVRPAR VEGLKRVAAA LALASALCWP HAARTEAPPA APAMLLAKVY 70 80 90 100 110 120 AADVDVTQYW VSEKFDGVRA QWDGHVLRFR GGGLAPAPAW FTADFPRVPL DGELWIARDA 130 140 150 160 170 180 FDALSGTVRK APPVDAEWRR VRYLVFELPG APGDFSARVG QMREVIEQAA VPWLEAVAQT 190 200 210 220 230 240 RVASREDLMQ RLDAEVRAGG EGLMLHRADA PYLTGRSDAL LKLKPWLDAE AIVVGYVPGK 250 260 270 280 290 300 GKYAGMTGAL RMETPDGKRF RLGSGLSDAL RRQPPPVGTR ITYRYTALTK NGMPRFPRYL RVREDF

References

[1]

"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans." Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P. J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25259.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000116 Genomic DNA. Translation: AAZ96765.1.
RefSeq	YP_314570.1. NC_007404.1.
3D structure databases
ProteinModelPortal	Q3SKL4.
ModBase	Search...
Protein-protein interaction databases
STRING	292415.Tbd_0812.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAZ96765; AAZ96765; Tbd_0812.
GeneID	3673509.
KEGG	tbd:Tbd_0812.
PATRIC	23967793. VBIThiDen82923_0811.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q3SKL4_THIDA

Accession

Primary (citable) accession number: Q3SKL4

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)