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Q3SKL4

- Q3SKL4_THIDA

UniProt

Q3SKL4 - Q3SKL4_THIDA

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Protein
Submitted name: DNA ligase, ATP-dependent
Gene
Tbd_0812
Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-833-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:Tbd_0812Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
ProteomesiUP000008291: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4646 PredictedImported
Add
BLAST
Chaini47 – 306260 PredictedImported
PRO_5000103304Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_0812.

Structurei

3D structure databases

ProteinModelPortaliQ3SKL4.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q3SKL4-1 [UniParc]FASTAAdd to Basket

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MARRLSRPAT VRPETVRPAR VEGLKRVAAA LALASALCWP HAARTEAPPA    50
APAMLLAKVY AADVDVTQYW VSEKFDGVRA QWDGHVLRFR GGGLAPAPAW 100
FTADFPRVPL DGELWIARDA FDALSGTVRK APPVDAEWRR VRYLVFELPG 150
APGDFSARVG QMREVIEQAA VPWLEAVAQT RVASREDLMQ RLDAEVRAGG 200
EGLMLHRADA PYLTGRSDAL LKLKPWLDAE AIVVGYVPGK GKYAGMTGAL 250
RMETPDGKRF RLGSGLSDAL RRQPPPVGTR ITYRYTALTK NGMPRFPRYL 300
RVREDF 306
Length:306
Mass (Da):33,813
Last modified:October 11, 2005 - v1
Checksum:i90B2C0607DBE287D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000116 Genomic DNA. Translation: AAZ96765.1.
RefSeqiWP_011311324.1. NC_007404.1.
YP_314570.1. NC_007404.1.

Genome annotation databases

EnsemblBacteriaiAAZ96765; AAZ96765; Tbd_0812.
GeneIDi3673509.
KEGGitbd:Tbd_0812.
PATRICi23967793. VBIThiDen82923_0811.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000116 Genomic DNA. Translation: AAZ96765.1 .
RefSeqi WP_011311324.1. NC_007404.1.
YP_314570.1. NC_007404.1.

3D structure databases

ProteinModelPortali Q3SKL4.
ModBasei Search...

Protein-protein interaction databases

STRINGi 292415.Tbd_0812.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAZ96765 ; AAZ96765 ; Tbd_0812 .
GeneIDi 3673509.
KEGGi tbd:Tbd_0812.
PATRICi 23967793. VBIThiDen82923_0811.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci TDEN292415:GHWG-833-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
    Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
    J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25259Imported.

Entry informationi

Entry nameiQ3SKL4_THIDA
AccessioniPrimary (citable) accession number: Q3SKL4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: September 3, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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