Q3SK04 (Q3SK04_THIDA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative diguanylate cyclase (GGDEF domain) EMBL AAZ96992.1

Gene names

Ordered Locus Names:

Tbd_1039

Organism

Thiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ96992.1

Taxonomic identifier

292415 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Hydrogenophilales › Hydrogenophilaceae › Thiobacillus

Protein attributes

Sequence length	393 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cyclic nucleotide biosynthetic process Inferred from electronic annotation. Source: InterPro regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	phosphorus-oxygen lyase activity Inferred from electronic annotation. Source: InterPro two-component response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3SK04 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: AF56B2E6D291B016	FASTA	393	44,056
	10 20 30 40 50 60 MAARAIRWDE ALPEAAGVTP LLLLDMSGSP RPEWTARLQK LRQRFPTGQL ICLEVGSDFD 70 80 90 100 110 120 QLQQALRGGC DSCLLEGTPS HAIVEHILEL NERQEQETFR VLIVEDSKTA SHMIQRTLAE 130 140 150 160 170 180 SQIASEIVND PRQTLNALKQ FNPDLILMDM YMPDCTGVEV ARIIRQHDEF LGMPIVYLSG 190 200 210 220 230 240 ETNVALQVDA MRLGGDHFLT KPFNPVFLNT IVKSKIERYR ALRRSMYHDS LTGLLNHSSG 250 260 270 280 290 300 KNTLDMVLSG IAHEEGTLSV VMIDIDHFKQ INDSYGHPTG DQVIRSLSWL LKQRLRKHDI 310 320 330 340 350 360 LCRYGGEEFL VGLPHTDAGQ ALAILERVRQ DFAQIRHPYR DTHFSASVSA GVASYPHQQS 370 380 390 GDALIKAADE ALYQAKHRGR NRVHIGMPAQ ALA

References

[1]

"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans." Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P. J. Bacteriol. 188:1473-1488(2006) [PubMed: 16452431] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000116 Genomic DNA. Translation: AAZ96992.1.
RefSeq	YP_314797.1. NC_007404.1.
3D structure databases
ProteinModelPortal	Q3SK04.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3SK04.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3671264.
GenomeReviews	Gene locus Tbd_1039 in contig CP000116_GR.
KEGG	tbd:Tbd_1039.
NMPDR	fig|292415.3.peg.894.
PATRIC	23968229. VBIThiDen82923_1024.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3706.
HOGENOM	HBG242677.
OMA	LTHLHNR.
ProtClustDB	CLSK741704.
Enzyme and pathway databases
BioCyc	TDEN292415:TBD_1039-MONOMER.
Family and domain databases
InterPro	IPR001054. A/G_cyclase. IPR011006. CheY-like_superfamily. IPR000160. Diguanylate_cyclase-pred. IPR001789. Sig_transdc_resp-reg_receiver. [Graphical view]
Pfam	PF00990. GGDEF. 1 hit. PF00072. Response_reg. 1 hit. [Graphical view]
SMART	SM00267. GGDEF. 1 hit. SM00448. REC. 1 hit. [Graphical view]
SUPFAM	SSF55073. A/G_cyclase. 1 hit. SSF52172. CheY_like. 1 hit.
TIGRFAMs	TIGR00254. GGDEF. 1 hit.
PROSITE	PS50887. GGDEF. 1 hit. PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3SK04_THIDA

Accession

Primary (citable) accession number: Q3SK04

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	January 25, 2012
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)