Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q3SJM9

- Q3SJM9_THIDA

UniProt

Q3SJM9 - Q3SJM9_THIDA

Protein
Submitted name:

Alpha amylase, catalytic subdomain

Gene

Tbd_1172

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. cation binding Source: InterPro
    2. transferase activity, transferring phosphorus-containing groups Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciTDEN292415:GHWG-1200-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase, catalytic subdomainImported
    Gene namesi
    Ordered Locus Names:Tbd_1172Imported
    OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
    Taxonomic identifieri292415 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
    ProteomesiUP000008291: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi292415.Tbd_1172.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3SJM9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000268420.
    KOiK05343.
    OMAiGTRIIFT.
    OrthoDBiEOG6RVFV2.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 3 hits.
    InterProiIPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR011009. Kinase-like_dom.
    IPR012810. TreS/a-amylase_N.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.
    SSF56112. SSF56112. 1 hit.
    TIGRFAMsiTIGR02456. treS_nterm. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3SJM9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEENDPLWYK DAIVYELHVK AFFDANGDGA GDFRGLISKL DYLQELGVNA     50
    LWLLPFYPSP GRDDGYDISD YHNLHPSFGD MADFRRFIRE AHQRGLRVIT 100
    ELVVNHTSDQ HPWFQAARRA PPGSVKRNYY VWSDTDTRFS ETRIIFSDTE 150
    KSNWAWDEVA QAYYWHRFFS HQPDLNFNNP HVFKAIMRTM RFWFDAGVDG 200
    MRLDAVPYLC ERDGTSNENL PETHAVIRRM RAELDARYSN RMFLAEANQW 250
    PEDVREYFGN GDECHMAYHF PLMPRMYMAI AQEDRHPIVE IMEQTPDIPD 300
    LCQWAVFLRN HDELTLEMVT DRERDYLYQA YASDPQARLN LGIRRRLAPL 350
    LDNDRHRIEL MNLLLMTMPG SPIVYYGDEI GMGDNLLLGD RNGVRTPMQW 400
    DGGPNGGFSS APTERLFLPP ITDPVYGYGA VNVEAQQRNP SSLLNWTRRL 450
    IAMRKAHRAL GRGTLRFLRP GNRKVLAYLR EYEGETILCV ANVARAPQAV 500
    ELDLSPFKGH VPVELMGRSS FPPIGELPYL LTLGGYGCFV FRLATDVEAP 550
    AWHEERPVPP DLPVLVLVDA GWRTLFARTD EGVNQLMVRR AREQLERQII 600
    PRYFRTQPWF VYSEAALEKF EFGTLREWGT DSGTWLLATV TVTLLDGSIY 650
    HYALPLGLAW EDEDEGRVAA LLHVTLAKVR RLARVGILFD AFWDDGFCCA 700
    IVSAMERGET LAYGDGHLTF RTASAYPGFF CPLVTSSITR TVSEHGRLRV 750
    NLNDQLVLKS YPRQMQGTHP ELEMSRFLTE TAKFAHIPQL GGTVEYVASS 800
    GRHSTLAILE RYAPNQGDAW AYTLNYLERF LDLSRTTGEQ APDGRHGRYM 850
    GLMKTLGERT AEFHRALATP DRSGDFGSEP IAPPDILEWV NKVRHEMGVM 900
    YELLERALPA LPEPVAVAAQ QLFLVRPKLY RRVIRASRVR VDASKTRCHG 950
    NYHLGQVWLV QNDFLIANYG GIPGRSWEER RAKHAPLRDV ASMLLSLSQA 1000
    GAAALARVAG DSVDVMAALQ PHVDAWELAA RKAFYRGYRK GMDGHAAYPT 1050
    DATAAEALLT LFLAEKAIAE LTEALERRAV GSAAAMRRLV QVTRR 1095
    Length:1,095
    Mass (Da):124,584
    Last modified:October 11, 2005 - v1
    Checksum:iE8207596865E104A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ97125.1.
    RefSeqiWP_011311684.1. NC_007404.1.
    YP_314930.1. NC_007404.1.

    Genome annotation databases

    EnsemblBacteriaiAAZ97125; AAZ97125; Tbd_1172.
    GeneIDi3671533.
    KEGGitbd:Tbd_1172.
    PATRICi23968499. VBIThiDen82923_1158.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ97125.1 .
    RefSeqi WP_011311684.1. NC_007404.1.
    YP_314930.1. NC_007404.1.

    3D structure databases

    ProteinModelPortali Q3SJM9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 292415.Tbd_1172.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAZ97125 ; AAZ97125 ; Tbd_1172 .
    GeneIDi 3671533.
    KEGGi tbd:Tbd_1172.
    PATRICi 23968499. VBIThiDen82923_1158.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000268420.
    KOi K05343.
    OMAi GTRIIFT.
    OrthoDBi EOG6RVFV2.

    Enzyme and pathway databases

    BioCyci TDEN292415:GHWG-1200-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 3 hits.
    InterProi IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR011009. Kinase-like_dom.
    IPR012810. TreS/a-amylase_N.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    SSF56112. SSF56112. 1 hit.
    TIGRFAMsi TIGR02456. treS_nterm. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
      Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
      J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25259Imported.

    Entry informationi

    Entry nameiQ3SJM9_THIDA
    AccessioniPrimary (citable) accession number: Q3SJM9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3