Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Alpha amylase, catalytic subdomain

Gene

Tbd_1172

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-1200-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic subdomainImported
Gene namesi
Ordered Locus Names:Tbd_1172Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
ProteomesiUP000008291 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_1172.

Structurei

3D structure databases

ProteinModelPortaliQ3SJM9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000268420.
KOiK05343.
OMAiGTRIIFT.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
SSF56112. SSF56112. 1 hit.
TIGRFAMsiTIGR02456. treS_nterm. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3SJM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEENDPLWYK DAIVYELHVK AFFDANGDGA GDFRGLISKL DYLQELGVNA
60 70 80 90 100
LWLLPFYPSP GRDDGYDISD YHNLHPSFGD MADFRRFIRE AHQRGLRVIT
110 120 130 140 150
ELVVNHTSDQ HPWFQAARRA PPGSVKRNYY VWSDTDTRFS ETRIIFSDTE
160 170 180 190 200
KSNWAWDEVA QAYYWHRFFS HQPDLNFNNP HVFKAIMRTM RFWFDAGVDG
210 220 230 240 250
MRLDAVPYLC ERDGTSNENL PETHAVIRRM RAELDARYSN RMFLAEANQW
260 270 280 290 300
PEDVREYFGN GDECHMAYHF PLMPRMYMAI AQEDRHPIVE IMEQTPDIPD
310 320 330 340 350
LCQWAVFLRN HDELTLEMVT DRERDYLYQA YASDPQARLN LGIRRRLAPL
360 370 380 390 400
LDNDRHRIEL MNLLLMTMPG SPIVYYGDEI GMGDNLLLGD RNGVRTPMQW
410 420 430 440 450
DGGPNGGFSS APTERLFLPP ITDPVYGYGA VNVEAQQRNP SSLLNWTRRL
460 470 480 490 500
IAMRKAHRAL GRGTLRFLRP GNRKVLAYLR EYEGETILCV ANVARAPQAV
510 520 530 540 550
ELDLSPFKGH VPVELMGRSS FPPIGELPYL LTLGGYGCFV FRLATDVEAP
560 570 580 590 600
AWHEERPVPP DLPVLVLVDA GWRTLFARTD EGVNQLMVRR AREQLERQII
610 620 630 640 650
PRYFRTQPWF VYSEAALEKF EFGTLREWGT DSGTWLLATV TVTLLDGSIY
660 670 680 690 700
HYALPLGLAW EDEDEGRVAA LLHVTLAKVR RLARVGILFD AFWDDGFCCA
710 720 730 740 750
IVSAMERGET LAYGDGHLTF RTASAYPGFF CPLVTSSITR TVSEHGRLRV
760 770 780 790 800
NLNDQLVLKS YPRQMQGTHP ELEMSRFLTE TAKFAHIPQL GGTVEYVASS
810 820 830 840 850
GRHSTLAILE RYAPNQGDAW AYTLNYLERF LDLSRTTGEQ APDGRHGRYM
860 870 880 890 900
GLMKTLGERT AEFHRALATP DRSGDFGSEP IAPPDILEWV NKVRHEMGVM
910 920 930 940 950
YELLERALPA LPEPVAVAAQ QLFLVRPKLY RRVIRASRVR VDASKTRCHG
960 970 980 990 1000
NYHLGQVWLV QNDFLIANYG GIPGRSWEER RAKHAPLRDV ASMLLSLSQA
1010 1020 1030 1040 1050
GAAALARVAG DSVDVMAALQ PHVDAWELAA RKAFYRGYRK GMDGHAAYPT
1060 1070 1080 1090
DATAAEALLT LFLAEKAIAE LTEALERRAV GSAAAMRRLV QVTRR
Length:1,095
Mass (Da):124,584
Last modified:October 11, 2005 - v1
Checksum:iE8207596865E104A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ97125.1.
RefSeqiWP_011311684.1. NC_007404.1.
YP_314930.1. NC_007404.1.

Genome annotation databases

EnsemblBacteriaiAAZ97125; AAZ97125; Tbd_1172.
KEGGitbd:Tbd_1172.
PATRICi23968499. VBIThiDen82923_1158.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ97125.1.
RefSeqiWP_011311684.1. NC_007404.1.
YP_314930.1. NC_007404.1.

3D structure databases

ProteinModelPortaliQ3SJM9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi292415.Tbd_1172.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ97125; AAZ97125; Tbd_1172.
KEGGitbd:Tbd_1172.
PATRICi23968499. VBIThiDen82923_1158.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000268420.
KOiK05343.
OMAiGTRIIFT.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-1200-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
SSF56112. SSF56112. 1 hit.
TIGRFAMsiTIGR02456. treS_nterm. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
    Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
    J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25259Imported.

Entry informationi

Entry nameiQ3SJM9_THIDA
AccessioniPrimary (citable) accession number: Q3SJM9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 29, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.