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Q3SIF6 (Q3SIF6_THIDA) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Tbd_1619 EMBL AAZ97572.1
OrganismThiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ97572.1
Taxonomic identifier292415 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus

Protein attributes

Sequence length559 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AAZ97572.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processchemotaxis

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functiontransmembrane signaling receptor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential EMBL AAZ97572.1
Chain27 – 559533 Potential EMBL AAZ97572.1
PRO_5000103466

Sequences

Sequence LengthMass (Da)Tools
Q3SIF6 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: DCC4F79098178449

FASTA55959,358
        10         20         30         40         50         60 
MKLKSKIVLS MGLVFLLFGV AISVALIGMQ GNKDRFDRFV EQDLALSRAV TNLYAHGLQM 

        70         80         90        100        110        120 
GQALRNIVMD PSNQAAYKNL EDSAAGFKKT SDEALVLAAA SPADLKVLQE VVAFREQQIP 

       130        140        150        160        170        180 
LQAKIVSLAA ADQAAAMTTI REEETPVWRN IRVRLMDLNK AKNAAVEQTK AEVNAFSQRM 

       190        200        210        220        230        240 
LTITLVLVVL ALGVASVIVV WLVRHIMKQL GGEPVYAVEM AQAISEGNFS RSITLDKGDN 

       250        260        270        280        290        300 
SSLLYAINGM RENLTVTVGS IRQAADTIAV ASREIASGNA DLSSRTESQA SSLEETASSM 

       310        320        330        340        350        360 
EELTSTVRQN AENARQANQL VVSTADVAVK GGEVVGQVVD TMASIKDSSR KISDIIGVID 

       370        380        390        400        410        420 
GIAFQTNILA LNAAVEAARA GEQGRGFAVV ASEVRNLAQR SAGAAKEIKS LIEDSVGKVD 

       430        440        450        460        470        480 
AGSKLVDEAG KTMDEIVSSV KRVTDIMSEI AAASQEQSAG IEQVNQAVGQ MDEMTQQNAA 

       490        500        510        520        530        540 
LVEEAAAAAE SLQEQAAKLA DAVSVFRLDG AYAQRREVPV SAPRVAPLPT RPRPASVPAA 

       550 
RPKKLAAAQG NDGGDWEEF 

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References

[1]"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25259 EMBL AAZ97572.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000116 Genomic DNA. Translation: AAZ97572.1.
RefSeqYP_315377.1. NC_007404.1.

3D structure databases

ProteinModelPortalQ3SIF6.
SMRQ3SIF6. Positions 285-508.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING292415.Tbd_1619.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ97572; AAZ97572; Tbd_1619.
GeneID3673004.
KEGGtbd:Tbd_1619.
PATRIC23969399. VBIThiDen82923_1605.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0840.
HOGENOMHOG000148074.
OMAINGMREN.
OrthoDBEOG6G4VQG.
ProtClustDBCLSK2770269.

Enzyme and pathway databases

BioCycTDEN292415:GHWG-1650-MONOMER.

Family and domain databases

InterProIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamPF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSPR00260. CHEMTRNSDUCR.
SMARTSM00283. MA. 1 hit.
[Graphical view]
PROSITEPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3SIF6_THIDA
AccessionPrimary (citable) accession number: Q3SIF6
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 13, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)