Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q3SIF5 (Q3SIF5_THIDA) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Tbd_1620 EMBL AAZ97573.1
OrganismThiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ97573.1
Taxonomic identifier292415 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus

Protein attributes

Sequence length559 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AAZ97573.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processchemotaxis

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functionsignal transducer activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL AAZ97573.1
Chain24 – 559536 Potential EMBL AAZ97573.1
PRO_5000103467

Sequences

Sequence LengthMass (Da)Tools
Q3SIF5 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: A98B863E7142D8E3

FASTA55958,996
        10         20         30         40         50         60 
MKIGARLGLG FASVLLLLVV VAVIGVWRLQ TVGMMTDSLV KNEMHKARII NEWESIINAN 

        70         80         90        100        110        120 
AVRALAAAKT NNPETEKFFV DASAAASKGG IALQKQLESL LTDAESRALF AAIADKRSAY 

       130        140        150        160        170        180 
LAARDAALKE KAAGNVLGAK KFVDEDMKPR LDAYLESLHD LARYQKQAID ATAGNIHRQY 

       190        200        210        220        230        240 
ESGRMLLIGL SIVALMMGIG FAFWITRSIT RPMNQAVKVA QTVAAGDLTS RIEVEGKDET 

       250        260        270        280        290        300 
GRLLQALKDM NDSLVKIVGQ VRLGTDAIAT ASSEIATGNL DLSSRTEEQA SSLEETASSM 

       310        320        330        340        350        360 
EQLTSTVKQN ADHARQANQM AVSASEVAVK GGAVVAQVVD TMGSINESSR KIVDIIAVID 

       370        380        390        400        410        420 
GIAFQTNILA LNAAVEAARA GEQGRGFAVV ASEVRSLAQR SAGAAKEIKT LIGDSVEKAD 

       430        440        450        460        470        480 
IGSKLVGQAG ATMDEIVASV KRVTDIMGEI TAASQEQSAG IEQVNQAIAQ MDEVTQQNAA 

       490        500        510        520        530        540 
LVEEAAAAAS SMQDQAANLA EAVSVFRLAG VNTQRPEQLT SNERIAALPA RTHTAAAPVV 

       550 
RTKKLAAIQG SSGGEWEEF 

« Hide

References

[1]"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25259 EMBL AAZ97573.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000116 Genomic DNA. Translation: AAZ97573.1.
RefSeqYP_315378.1. NC_007404.1.

3D structure databases

ProteinModelPortalQ3SIF5.
SMRQ3SIF5. Positions 285-508.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING292415.Tbd_1620.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ97573; AAZ97573; Tbd_1620.
GeneID3673005.
KEGGtbd:Tbd_1620.
PATRIC23969401. VBIThiDen82923_1606.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0840.
HOGENOMHOG000148074.
KOK03406.
OMAQINGAMR.
OrthoDBEOG6G4VQG.

Enzyme and pathway databases

BioCycTDEN292415:GHWG-1651-MONOMER.

Family and domain databases

InterProIPR024478. 4HB_MCP.
IPR004090. Chemotax_Me-accpt_rcpt.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamPF12729. 4HB_MCP_1. 1 hit.
PF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
[Graphical view]
PRINTSPR00260. CHEMTRNSDUCR.
SMARTSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3SIF5_THIDA
AccessionPrimary (citable) accession number: Q3SIF5
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 19, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)