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Protein
Submitted name:

Chemotaxis sensory transducer

Gene

Tbd_1622

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-1653-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Chemotaxis sensory transducerImported
Gene namesi
Ordered Locus Names:Tbd_1622Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
Proteomesi
  • UP000008291 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3322HelicalSequence analysisAdd
BLAST
Transmembranei199 – 21921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_1622.

Structurei

3D structure databases

ProteinModelPortaliQ3SIF3.
SMRiQ3SIF3. Positions 298-521.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini220 – 27253HAMPInterPro annotationAdd
BLAST
Domaini277 – 506230Methyl-accepting transducerInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili477 – 51539Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105C8Q. Bacteria.
COG0840. LUCA.
HOGENOMiHOG000148074.
KOiK05874.
OMAiIVNETME.
OrthoDBiEOG6G4VQG.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_dom.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3SIF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEMLANLSIK SRLVFVIGFL SILLTAIGGL GLVSLSATNG SLKTVYEDRV
60 70 80 90 100
VGLGHLERIN ALMNGSQIIV GEAVAGQLSA FPDDSAVVDQ RVNDIKNTIT
110 120 130 140 150
EIDGIWKTFL ASHLSSEEKA LADAFSASRQ KYGREGVVPV LAALSAHDFQ
160 170 180 190 200
QAGEILQGPM RETYPAVRAN AEALIASQLK LAQSEFAAAQ SRFVMVRNIS
210 220 230 240 250
VFAIVAGVLL AGLTGVWLVR AITRPLNQAV RIAESVAAGD LTQKIEVQSQ
260 270 280 290 300
DETGQLMQAL KDMNVSLADI VGQVRHGTDT IAVASREIAS GNADLSSRTE
310 320 330 340 350
SQASSLEETA SSMEELTSTV RQNAENARQA NQLVVSTADV AVKGGEVVGQ
360 370 380 390 400
VVDTMASIKD SSRKISDIIG VIDGIAFQTN ILALNAAVEA ARAGEQGRGF
410 420 430 440 450
AVVASEVRNL AQRSAGAAKE IKSLIEDSVG KVDAGSKLVD EAGKTMDEIV
460 470 480 490 500
SSVKRVTDIM SEIAAASQEQ SAGIEQVNQA VGQMDEMTQQ NAALVEEAAA
510 520 530 540 550
AAESLQEQAA KLADAVSVFR LDGAYAQRRE VPVSAPRVAP LPTRPRPASV
560 570
PAARPKKLAA AQGNDGGDWE EF
Length:572
Mass (Da):60,167
Last modified:October 11, 2005 - v1
Checksum:i2FA13CC8F90FFDD0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ97575.1.

Genome annotation databases

EnsemblBacteriaiAAZ97575; AAZ97575; Tbd_1622.
KEGGitbd:Tbd_1622.
PATRICi23969405. VBIThiDen82923_1608.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ97575.1.

3D structure databases

ProteinModelPortaliQ3SIF3.
SMRiQ3SIF3. Positions 298-521.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi292415.Tbd_1622.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ97575; AAZ97575; Tbd_1622.
KEGGitbd:Tbd_1622.
PATRICi23969405. VBIThiDen82923_1608.

Phylogenomic databases

eggNOGiENOG4105C8Q. Bacteria.
COG0840. LUCA.
HOGENOMiHOG000148074.
KOiK05874.
OMAiIVNETME.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-1653-MONOMER.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_dom.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
    Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
    J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25259Imported.

Entry informationi

Entry nameiQ3SIF3_THIDA
AccessioniPrimary (citable) accession number: Q3SIF3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 16, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.