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Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

Tbd_2247

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciTDEN292415:G1G56-2275-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependent, putativeImported
Gene namesi
Ordered Locus Names:Tbd_2247Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesThiobacillaceaeThiobacillus
Proteomesi
  • UP000008291 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_2247

Structurei

3D structure databases

ProteinModelPortaliQ3SGP7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini334 – 469DNA_LIGASE_A3InterPro annotationAdd BLAST136

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiAMMVEDH
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

Q3SGP7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRDPLSTY TEKRDFSISP EPVSGGQANE AARSFVVQKH WATRLHYDFR
60 70 80 90 100
LELDGSMKSW AVPKGPSLDP ADKRMAVHVE DHPIAYNAFE GTIPPRQYGA
110 120 130 140 150
GKVIIWDKGT WVPLVDPRRG YEEGHLKFEL HGHKLQGRWA LVRMKGKGEA
160 170 180 190 200
KEPWLLIKEK DEHARPAADY SVVDALPDSV ADKDDAAAVT KAAAPRRRAG
210 220 230 240 250
ETPRPRKARA AKATEKAGAA AVEGAVKSAL PATLAPQLAT LADKPPDDGD
260 270 280 290 300
GWVYEVKFDG YRMLARIDKT VRLFTRNGND WSHRLAPLVK AIEAAGLRPG
310 320 330 340 350
WLDGEVVVPN AAGVPDFQAL QNAFDQARAD AIVYYVFDLP FYDGYDLRAA
360 370 380 390 400
PLVARKALLA GLLDTPHSDA LRLSESFDAA PRDILASACK MGLEGVIAKR
410 420 430 440 450
RDAPYVSRRS TDWLKLKCTR RQEFVIGGYT DPRGSRPGLG SLLLGVHDAR
460 470 480 490 500
GELVYAGNVG TGFDHGTLGD LRKKLAAHAR DTSPFVDATG IAGKPHWVDP
510 520 530 540 550
KLVAEVSFGE WTKSGRIRHA VFEGLRLDKR AASVVREEPV AAAAAAPRLP
560 570 580 590 600
ADLKVSHPER VVDKASGTTK LALIAYYARV APLMMPHLKA RPVSLVRAPD
610 620 630 640 650
GVGGSLFFQK HVEASQMRGV KTLPRTLDPG HAPLIEVAAA EGLLTAAQMN
660 670 680 690 700
VIEFHTWNAR KTRIDKPDRM TFDLDPGEGV GWTTVQESAH LVREFLSQLG
710 720 730 740 750
LASFLKTSGG KGLHIVVPLK RLHDWDTVKD FSHAIVRHLA RTLPQRFAAK
760 770 780 790 800
SGPKNRVGKI FIDYLRNGFG ATTVAAWSVR ARPGLGVSVP LEWRELDALT
810 820 830 840
SAAQWTVPNI DSRLEIGNAP WEAYDASSHS LTRAMKTLGH VPKTPA
Length:846
Mass (Da):92,492
Last modified:October 11, 2005 - v1
Checksum:i66AE24D0BA3B1FAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA Translation: AAZ98200.1
RefSeqiWP_011312759.1, NC_007404.1

Genome annotation databases

EnsemblBacteriaiAAZ98200; AAZ98200; Tbd_2247
KEGGitbd:Tbd_2247

Similar proteinsi

Entry informationi

Entry nameiQ3SGP7_THIDA
AccessioniPrimary (citable) accession number: Q3SGP7
Entry historyiIntegrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 28, 2018
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported