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Q3SGP7 (Q3SGP7_THIDA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase, ATP-dependent, putative EMBL AAZ98200.1
Gene names
Ordered Locus Names:Tbd_2247
OrganismThiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP] EMBL AAZ98200.1
Taxonomic identifier292415 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Hydrogenophilales › Hydrogenophilaceae › Thiobacillus ›

Protein attributes

Sequence length846 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AAZ98200.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3SGP7 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 66AE24D0BA3B1FAC

FASTA84692,492
        10         20         30         40         50         60 
MAKRDPLSTY TEKRDFSISP EPVSGGQANE AARSFVVQKH WATRLHYDFR LELDGSMKSW 

        70         80         90        100        110        120 
AVPKGPSLDP ADKRMAVHVE DHPIAYNAFE GTIPPRQYGA GKVIIWDKGT WVPLVDPRRG 

       130        140        150        160        170        180 
YEEGHLKFEL HGHKLQGRWA LVRMKGKGEA KEPWLLIKEK DEHARPAADY SVVDALPDSV 

       190        200        210        220        230        240 
ADKDDAAAVT KAAAPRRRAG ETPRPRKARA AKATEKAGAA AVEGAVKSAL PATLAPQLAT 

       250        260        270        280        290        300 
LADKPPDDGD GWVYEVKFDG YRMLARIDKT VRLFTRNGND WSHRLAPLVK AIEAAGLRPG 

       310        320        330        340        350        360 
WLDGEVVVPN AAGVPDFQAL QNAFDQARAD AIVYYVFDLP FYDGYDLRAA PLVARKALLA 

       370        380        390        400        410        420 
GLLDTPHSDA LRLSESFDAA PRDILASACK MGLEGVIAKR RDAPYVSRRS TDWLKLKCTR 

       430        440        450        460        470        480 
RQEFVIGGYT DPRGSRPGLG SLLLGVHDAR GELVYAGNVG TGFDHGTLGD LRKKLAAHAR 

       490        500        510        520        530        540 
DTSPFVDATG IAGKPHWVDP KLVAEVSFGE WTKSGRIRHA VFEGLRLDKR AASVVREEPV 

       550        560        570        580        590        600 
AAAAAAPRLP ADLKVSHPER VVDKASGTTK LALIAYYARV APLMMPHLKA RPVSLVRAPD 

       610        620        630        640        650        660 
GVGGSLFFQK HVEASQMRGV KTLPRTLDPG HAPLIEVAAA EGLLTAAQMN VIEFHTWNAR 

       670        680        690        700        710        720 
KTRIDKPDRM TFDLDPGEGV GWTTVQESAH LVREFLSQLG LASFLKTSGG KGLHIVVPLK 

       730        740        750        760        770        780 
RLHDWDTVKD FSHAIVRHLA RTLPQRFAAK SGPKNRVGKI FIDYLRNGFG ATTVAAWSVR 

       790        800        810        820        830        840 
ARPGLGVSVP LEWRELDALT SAAQWTVPNI DSRLEIGNAP WEAYDASSHS LTRAMKTLGH 


VPKTPA

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References

[1]"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25259.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000116 Genomic DNA. Translation: AAZ98200.1.
RefSeqYP_316005.1. NC_007404.1.

3D structure databases

ProteinModelPortalQ3SGP7.
SMRQ3SGP7. Positions 551-837.
ModBaseSearch...

Protein-protein interaction databases

STRING292415.Tbd_2247.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ98200; AAZ98200; Tbd_2247.
GeneID3672308.
KEGGtbd:Tbd_2247.
PATRIC23970673. VBIThiDen82923_2224.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3SGP7_THIDA
AccessionPrimary (citable) accession number: Q3SGP7
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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