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Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

Tbd_2247

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-2296-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependent, putativeImported
Gene namesi
Ordered Locus Names:Tbd_2247Imported
OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
Taxonomic identifieri292415 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
ProteomesiUP000008291: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi292415.Tbd_2247.

Structurei

3D structure databases

ProteinModelPortaliQ3SGP7.
SMRiQ3SGP7. Positions 551-837.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3SGP7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRDPLSTY TEKRDFSISP EPVSGGQANE AARSFVVQKH WATRLHYDFR
60 70 80 90 100
LELDGSMKSW AVPKGPSLDP ADKRMAVHVE DHPIAYNAFE GTIPPRQYGA
110 120 130 140 150
GKVIIWDKGT WVPLVDPRRG YEEGHLKFEL HGHKLQGRWA LVRMKGKGEA
160 170 180 190 200
KEPWLLIKEK DEHARPAADY SVVDALPDSV ADKDDAAAVT KAAAPRRRAG
210 220 230 240 250
ETPRPRKARA AKATEKAGAA AVEGAVKSAL PATLAPQLAT LADKPPDDGD
260 270 280 290 300
GWVYEVKFDG YRMLARIDKT VRLFTRNGND WSHRLAPLVK AIEAAGLRPG
310 320 330 340 350
WLDGEVVVPN AAGVPDFQAL QNAFDQARAD AIVYYVFDLP FYDGYDLRAA
360 370 380 390 400
PLVARKALLA GLLDTPHSDA LRLSESFDAA PRDILASACK MGLEGVIAKR
410 420 430 440 450
RDAPYVSRRS TDWLKLKCTR RQEFVIGGYT DPRGSRPGLG SLLLGVHDAR
460 470 480 490 500
GELVYAGNVG TGFDHGTLGD LRKKLAAHAR DTSPFVDATG IAGKPHWVDP
510 520 530 540 550
KLVAEVSFGE WTKSGRIRHA VFEGLRLDKR AASVVREEPV AAAAAAPRLP
560 570 580 590 600
ADLKVSHPER VVDKASGTTK LALIAYYARV APLMMPHLKA RPVSLVRAPD
610 620 630 640 650
GVGGSLFFQK HVEASQMRGV KTLPRTLDPG HAPLIEVAAA EGLLTAAQMN
660 670 680 690 700
VIEFHTWNAR KTRIDKPDRM TFDLDPGEGV GWTTVQESAH LVREFLSQLG
710 720 730 740 750
LASFLKTSGG KGLHIVVPLK RLHDWDTVKD FSHAIVRHLA RTLPQRFAAK
760 770 780 790 800
SGPKNRVGKI FIDYLRNGFG ATTVAAWSVR ARPGLGVSVP LEWRELDALT
810 820 830 840
SAAQWTVPNI DSRLEIGNAP WEAYDASSHS LTRAMKTLGH VPKTPA
Length:846
Mass (Da):92,492
Last modified:October 11, 2005 - v1
Checksum:i66AE24D0BA3B1FAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ98200.1.
RefSeqiWP_011312759.1. NC_007404.1.
YP_316005.1. NC_007404.1.

Genome annotation databases

EnsemblBacteriaiAAZ98200; AAZ98200; Tbd_2247.
GeneIDi3672308.
KEGGitbd:Tbd_2247.
PATRICi23970673. VBIThiDen82923_2224.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000116 Genomic DNA. Translation: AAZ98200.1.
RefSeqiWP_011312759.1. NC_007404.1.
YP_316005.1. NC_007404.1.

3D structure databases

ProteinModelPortaliQ3SGP7.
SMRiQ3SGP7. Positions 551-837.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi292415.Tbd_2247.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ98200; AAZ98200; Tbd_2247.
GeneIDi3672308.
KEGGitbd:Tbd_2247.
PATRICi23970673. VBIThiDen82923_2224.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciTDEN292415:GHWG-2296-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
    Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
    J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25259Imported.

Entry informationi

Entry nameiQ3SGP7_THIDA
AccessioniPrimary (citable) accession number: Q3SGP7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 4, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.