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Q3SGP7

- Q3SGP7_THIDA

UniProt

Q3SGP7 - Q3SGP7_THIDA

Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

Tbd_2247

Organism
Thiobacillus denitrificans (strain ATCC 25259)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTDEN292415:GHWG-2296-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependent, putativeImported
    Gene namesi
    Ordered Locus Names:Tbd_2247Imported
    OrganismiThiobacillus denitrificans (strain ATCC 25259)Imported
    Taxonomic identifieri292415 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaHydrogenophilalesHydrogenophilaceaeThiobacillus
    ProteomesiUP000008291: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi292415.Tbd_2247.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3SGP7.
    SMRiQ3SGP7. Positions 551-837.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3SGP7-1 [UniParc]FASTAAdd to Basket

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    MAKRDPLSTY TEKRDFSISP EPVSGGQANE AARSFVVQKH WATRLHYDFR    50
    LELDGSMKSW AVPKGPSLDP ADKRMAVHVE DHPIAYNAFE GTIPPRQYGA 100
    GKVIIWDKGT WVPLVDPRRG YEEGHLKFEL HGHKLQGRWA LVRMKGKGEA 150
    KEPWLLIKEK DEHARPAADY SVVDALPDSV ADKDDAAAVT KAAAPRRRAG 200
    ETPRPRKARA AKATEKAGAA AVEGAVKSAL PATLAPQLAT LADKPPDDGD 250
    GWVYEVKFDG YRMLARIDKT VRLFTRNGND WSHRLAPLVK AIEAAGLRPG 300
    WLDGEVVVPN AAGVPDFQAL QNAFDQARAD AIVYYVFDLP FYDGYDLRAA 350
    PLVARKALLA GLLDTPHSDA LRLSESFDAA PRDILASACK MGLEGVIAKR 400
    RDAPYVSRRS TDWLKLKCTR RQEFVIGGYT DPRGSRPGLG SLLLGVHDAR 450
    GELVYAGNVG TGFDHGTLGD LRKKLAAHAR DTSPFVDATG IAGKPHWVDP 500
    KLVAEVSFGE WTKSGRIRHA VFEGLRLDKR AASVVREEPV AAAAAAPRLP 550
    ADLKVSHPER VVDKASGTTK LALIAYYARV APLMMPHLKA RPVSLVRAPD 600
    GVGGSLFFQK HVEASQMRGV KTLPRTLDPG HAPLIEVAAA EGLLTAAQMN 650
    VIEFHTWNAR KTRIDKPDRM TFDLDPGEGV GWTTVQESAH LVREFLSQLG 700
    LASFLKTSGG KGLHIVVPLK RLHDWDTVKD FSHAIVRHLA RTLPQRFAAK 750
    SGPKNRVGKI FIDYLRNGFG ATTVAAWSVR ARPGLGVSVP LEWRELDALT 800
    SAAQWTVPNI DSRLEIGNAP WEAYDASSHS LTRAMKTLGH VPKTPA 846
    Length:846
    Mass (Da):92,492
    Last modified:October 11, 2005 - v1
    Checksum:i66AE24D0BA3B1FAC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ98200.1.
    RefSeqiWP_011312759.1. NC_007404.1.
    YP_316005.1. NC_007404.1.

    Genome annotation databases

    EnsemblBacteriaiAAZ98200; AAZ98200; Tbd_2247.
    GeneIDi3672308.
    KEGGitbd:Tbd_2247.
    PATRICi23970673. VBIThiDen82923_2224.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000116 Genomic DNA. Translation: AAZ98200.1 .
    RefSeqi WP_011312759.1. NC_007404.1.
    YP_316005.1. NC_007404.1.

    3D structure databases

    ProteinModelPortali Q3SGP7.
    SMRi Q3SGP7. Positions 551-837.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 292415.Tbd_2247.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAZ98200 ; AAZ98200 ; Tbd_2247 .
    GeneIDi 3672308.
    KEGGi tbd:Tbd_2247.
    PATRICi 23970673. VBIThiDen82923_2224.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci TDEN292415:GHWG-2296-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans."
      Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P.
      J. Bacteriol. 188:1473-1488(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25259Imported.

    Entry informationi

    Entry nameiQ3SGP7_THIDA
    AccessioniPrimary (citable) accession number: Q3SGP7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3