Q3SGD3 (RPIA_THIDA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribose-5-phosphate isomerase A
EC=5.3.1.6

Alternative name(s):
Phosphoriboisomerase A
Short name=PRI

Gene names

Name:	rpiA
Ordered Locus Names:	Tbd_2364

Organism

Thiobacillus denitrificans (strain ATCC 25259) [Complete proteome] [HAMAP]

Taxonomic identifier

292415 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Hydrogenophilales › Hydrogenophilaceae › Thiobacillus

Protein attributes

Sequence length	218 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	D-ribose 5-phosphate = D-ribulose 5-phosphate. HAMAP MF_00170
Pathway	Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. HAMAP MF_00170
Sequence similarities	Belongs to the ribose 5-phosphate isomerase family.

Ontologies

Keywords
Molecular function	Isomerase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	pentose-phosphate shunt, non-oxidative branch Inferred from electronic annotation. Source: InterPro
Molecular function	ribose-5-phosphate isomerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 218	218	Ribose-5-phosphate isomerase A HAMAP MF_00170		PRO_1000017024

Sequences

	Sequence		Length	Mass (Da)
	Q3SGD3 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: 2956A39304C064F2	FASTA	218	22,978
	10 20 30 40 50 60 MTQDEMKRAV ARAAVDYAKG GIIGVGTGST ANHFIDALAE VKGRIEGTVA SSEATAARLK 70 80 90 100 110 120 SHGIQVLDLN SVGELEVYVD GADEITQHFA MIKGGGGALT REKIVAACSK QFVCIADDSK 130 140 150 160 170 180 LVDVLGKFPL PVEVIPMARS HVARELVKLG GQPRLREGFT TDNGNVILDV HNLSIIDPVS 190 200 210 LETAINQIVG VVTNGLFARR GADVLLLGTS TGVKTFTR

References

[1]

"The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans." Beller H.R., Chain P.S., Letain T.E., Chakicherla A., Larimer F.W., Richardson P.M., Coleman M.A., Wood A.P., Kelly D.P. J. Bacteriol. 188:1473-1488(2006) [PubMed: 16452431] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25259.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000116 Genomic DNA. Translation: AAZ98317.1.
RefSeq	YP_316122.1. NC_007404.1.
3D structure databases
ProteinModelPortal	Q3SGD3.
SMR	Q3SGD3. Positions 1-218.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3SGD3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3671857.
GenomeReviews	Gene locus Tbd_2364 in contig CP000116_GR.
KEGG	tbd:Tbd_2364.
NMPDR	fig|292415.3.peg.2437.
PATRIC	23970917. VBIThiDen82923_2346.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0120.
HOGENOM	HBG515603.
OMA	TESLAVH.
PhylomeDB	Q3SGD3.
ProtClustDB	PRK00702.
Enzyme and pathway databases
BioCyc	TDEN292415:TBD_2364-MONOMER.
Family and domain databases
HAMAP	MF_00170. Rib_5P_isom_A. [Tree]
InterPro	IPR004788. Ribose5P_isomerase_typA. IPR020672. Ribose5P_isomerase_typA_subgr. [Graphical view]
KO	K01807.
PANTHER	PTHR11934. RpiA. 1 hit.
Pfam	PF06026. Rib_5-P_isom_A. 1 hit. [Graphical view]
TIGRFAMs	TIGR00021. RpiA. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RPIA_THIDA

Accession

Primary (citable) accession number: Q3SGD3

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	October 11, 2005
Last modified:	January 25, 2012
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program