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Q3MID1

- Q3MID1_RAT

UniProt

Q3MID1 - Q3MID1_RAT

Protein
Submitted name:

Selp protein

Gene

Selp

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (25 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. cell adhesion Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Selp proteinImported
    Gene namesi
    Name:SelpImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi3656. Selp.

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: InterPro

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Expressioni

    Gene expression databases

    GenevestigatoriQ3MID1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3MID1.
    SMRiQ3MID1. Positions 42-199.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains C-type lectin domain.SAAS annotation

    Keywords - Domaini

    EGF-like domainSAAS annotation, RepeatSAAS annotation, SushiSAAS annotation

    Phylogenomic databases

    HOVERGENiHBG052375.
    InParanoidiQ3MID1.

    Family and domain databases

    Gene3Di3.10.100.10. 1 hit.
    InterProiIPR001304. C-type_lectin.
    IPR016186. C-type_lectin-like.
    IPR018378. C-type_lectin_CS.
    IPR016187. C-type_lectin_fold.
    IPR000742. EG-like_dom.
    IPR013032. EGF-like_CS.
    IPR002396. Selectin_superfamily.
    IPR000436. Sushi_SCR_CCP.
    [Graphical view]
    PfamiPF00059. Lectin_C. 1 hit.
    PF00084. Sushi. 8 hits.
    [Graphical view]
    PRINTSiPR00343. SELECTIN.
    SMARTiSM00032. CCP. 8 hits.
    SM00034. CLECT. 1 hit.
    SM00181. EGF. 1 hit.
    [Graphical view]
    SUPFAMiSSF56436. SSF56436. 1 hit.
    SSF57535. SSF57535. 8 hits.
    PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
    PS50041. C_TYPE_LECTIN_2. 1 hit.
    PS00022. EGF_1. 1 hit.
    PS01186. EGF_2. 1 hit.
    PS50026. EGF_3. 1 hit.
    PS50923. SUSHI. 8 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3MID1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGCPKGSWK PRLRSVVLGA AQLVWLSALI SELVNQKEVA AWTYNYSTKA    50
    YSWNNSRAFC KRHFTDLVAI QNKNEIAHLN DVIPYVNSYY WIGIRKINNK 100
    WTWVGTNKTL TAEAENWADN EPNNKRNNQD CVEIYIKSNS APGKWNDEPC 150
    FKRKRALCYT ASCQDMSCNS QGECIETIGS YTCSCYPGFY GPECEYVQEC 200
    GKFDIPQHVL MNCSHPLGDF SFSSQCTFSC PEGYDLNGPS EMQCLASGIW 250
    TNNPPQCKAV QCQSLEAPLH GTMDCTHPLA AFAYDSSCKF ECQPGYRMRG 300
    SDILHCTDSG QWSEPLPTCE AIACEPLESP LHGSMDCFPS TGAFGYNSSC 350
    TFRCTEGFVL MGNDAIHCAD LGQWTAPAPV CEALQCQEFP VPSKAQVSCS 400
    DPFGTLKYQS ACSFSCDEGS LLVGASVIRC LATGHWSEAP PECQAVSCTP 450
    LLSPENGTMT CIQPLGHSNY KSTCQFMCDE GFYLSGPERL DCSPSGHWTG 500
    SPPMCEAIKC PEIFAPEQGS LDCSHVHGEF SVGSTCHFSC NEEFELLGSR 550
    NVECTVSGRW SAPPPTCKGV TSLPVPSVRC PALTTPGQGT MSCRHHLESF 600
    GPNTTCYFGC KTGFTLRGAN SLRCGASGQW TAVTPVCRAV KCSELHMDTA 650
    VAMNCSNPWG NFSYGSTCAF HCPEGQSLNG SARTTCGEDG HWSDAMPTCQ 700
    GTLTIQEALT YLGGALASTT GLAVGGTLLA LLRKRLRKKD DGKCPLNPHS 750
    HLGTYGVFTN AAYDPTP 767
    Length:767
    Mass (Da):83,340
    Last modified:October 25, 2005 - v1
    Checksum:i52E5A9BB8C6912F6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC101919 mRNA. Translation: AAI01920.1.
    UniGeneiRn.10012.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC101919 mRNA. Translation: AAI01920.1 .
    UniGenei Rn.10012.

    3D structure databases

    ProteinModelPortali Q3MID1.
    SMRi Q3MID1. Positions 42-199.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    RGDi 3656. Selp.

    Phylogenomic databases

    HOVERGENi HBG052375.
    InParanoidi Q3MID1.

    Gene expression databases

    Genevestigatori Q3MID1.

    Family and domain databases

    Gene3Di 3.10.100.10. 1 hit.
    InterProi IPR001304. C-type_lectin.
    IPR016186. C-type_lectin-like.
    IPR018378. C-type_lectin_CS.
    IPR016187. C-type_lectin_fold.
    IPR000742. EG-like_dom.
    IPR013032. EGF-like_CS.
    IPR002396. Selectin_superfamily.
    IPR000436. Sushi_SCR_CCP.
    [Graphical view ]
    Pfami PF00059. Lectin_C. 1 hit.
    PF00084. Sushi. 8 hits.
    [Graphical view ]
    PRINTSi PR00343. SELECTIN.
    SMARTi SM00032. CCP. 8 hits.
    SM00034. CLECT. 1 hit.
    SM00181. EGF. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56436. SSF56436. 1 hit.
    SSF57535. SSF57535. 8 hits.
    PROSITEi PS00615. C_TYPE_LECTIN_1. 1 hit.
    PS50041. C_TYPE_LECTIN_2. 1 hit.
    PS00022. EGF_1. 1 hit.
    PS01186. EGF_2. 1 hit.
    PS50026. EGF_3. 1 hit.
    PS50923. SUSHI. 8 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: ProstateImported.

    Entry informationi

    Entry nameiQ3MID1_RAT
    AccessioniPrimary (citable) accession number: Q3MID1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 25, 2005
    Last sequence update: October 25, 2005
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)