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Q3MID1

- Q3MID1_RAT

UniProt

Q3MID1 - Q3MID1_RAT

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Protein
Submitted name:

Selp protein

Gene

Selp

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. carbohydrate binding Source: InterPro

GO - Biological processi

  1. cell adhesion Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Selp proteinImported
Gene namesi
Name:SelpImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi3656. Selp.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Expressioni

Gene expression databases

GenevestigatoriQ3MID1.

Structurei

3D structure databases

ProteinModelPortaliQ3MID1.
SMRiQ3MID1. Positions 42-199.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains C-type lectin domain.SAAS annotation

Keywords - Domaini

EGF-like domainSAAS annotation, RepeatSAAS annotation, SushiSAAS annotation

Phylogenomic databases

HOVERGENiHBG052375.

Family and domain databases

Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR000742. EG-like_dom.
IPR013032. EGF-like_CS.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 8 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 8 hits.
SM00034. CLECT. 1 hit.
SM00181. EGF. 1 hit.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 8 hits.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3MID1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGCPKGSWK PRLRSVVLGA AQLVWLSALI SELVNQKEVA AWTYNYSTKA
60 70 80 90 100
YSWNNSRAFC KRHFTDLVAI QNKNEIAHLN DVIPYVNSYY WIGIRKINNK
110 120 130 140 150
WTWVGTNKTL TAEAENWADN EPNNKRNNQD CVEIYIKSNS APGKWNDEPC
160 170 180 190 200
FKRKRALCYT ASCQDMSCNS QGECIETIGS YTCSCYPGFY GPECEYVQEC
210 220 230 240 250
GKFDIPQHVL MNCSHPLGDF SFSSQCTFSC PEGYDLNGPS EMQCLASGIW
260 270 280 290 300
TNNPPQCKAV QCQSLEAPLH GTMDCTHPLA AFAYDSSCKF ECQPGYRMRG
310 320 330 340 350
SDILHCTDSG QWSEPLPTCE AIACEPLESP LHGSMDCFPS TGAFGYNSSC
360 370 380 390 400
TFRCTEGFVL MGNDAIHCAD LGQWTAPAPV CEALQCQEFP VPSKAQVSCS
410 420 430 440 450
DPFGTLKYQS ACSFSCDEGS LLVGASVIRC LATGHWSEAP PECQAVSCTP
460 470 480 490 500
LLSPENGTMT CIQPLGHSNY KSTCQFMCDE GFYLSGPERL DCSPSGHWTG
510 520 530 540 550
SPPMCEAIKC PEIFAPEQGS LDCSHVHGEF SVGSTCHFSC NEEFELLGSR
560 570 580 590 600
NVECTVSGRW SAPPPTCKGV TSLPVPSVRC PALTTPGQGT MSCRHHLESF
610 620 630 640 650
GPNTTCYFGC KTGFTLRGAN SLRCGASGQW TAVTPVCRAV KCSELHMDTA
660 670 680 690 700
VAMNCSNPWG NFSYGSTCAF HCPEGQSLNG SARTTCGEDG HWSDAMPTCQ
710 720 730 740 750
GTLTIQEALT YLGGALASTT GLAVGGTLLA LLRKRLRKKD DGKCPLNPHS
760
HLGTYGVFTN AAYDPTP
Length:767
Mass (Da):83,340
Last modified:October 25, 2005 - v1
Checksum:i52E5A9BB8C6912F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101919 mRNA. Translation: AAI01920.1.
UniGeneiRn.10012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101919 mRNA. Translation: AAI01920.1 .
UniGenei Rn.10012.

3D structure databases

ProteinModelPortali Q3MID1.
SMRi Q3MID1. Positions 42-199.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

RGDi 3656. Selp.

Phylogenomic databases

HOVERGENi HBG052375.

Gene expression databases

Genevestigatori Q3MID1.

Family and domain databases

Gene3Di 3.10.100.10. 1 hit.
InterProi IPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR000742. EG-like_dom.
IPR013032. EGF-like_CS.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP.
[Graphical view ]
Pfami PF00059. Lectin_C. 1 hit.
PF00084. Sushi. 8 hits.
[Graphical view ]
PRINTSi PR00343. SELECTIN.
SMARTi SM00032. CCP. 8 hits.
SM00034. CLECT. 1 hit.
SM00181. EGF. 1 hit.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 8 hits.
PROSITEi PS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 8 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: ProstateImported.

Entry informationi

Entry nameiQ3MID1_RAT
AccessioniPrimary (citable) accession number: Q3MID1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2005
Last sequence update: October 25, 2005
Last modified: October 29, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)