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Protein
Submitted name:

Selp protein

Gene

Selp

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Selp proteinImported
Gene namesi
Name:SelpImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi3656. Selp.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei708 – 732HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 36Sequence analysisAdd BLAST36
ChainiPRO_500422840237 – 767Sequence analysisAdd BLAST731

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PaxDbiQ3MID1.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003759.

Structurei

3D structure databases

ProteinModelPortaliQ3MID1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 159C-type lectinInterPro annotationAdd BLAST121
Domaini159 – 195EGF-likeInterPro annotationAdd BLAST37
Domaini198 – 259Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini260 – 321Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini322 – 383Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini384 – 445Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini446 – 507Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini508 – 569Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini578 – 639Sushi (CCP/SCR)InterPro annotationAdd BLAST62
Domaini640 – 701Sushi (CCP/SCR)InterPro annotationAdd BLAST62

Keywords - Domaini

EGF-like domainSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, SushiSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IS44. Eukaryota.
ENOG410Y5JF. LUCA.
HOVERGENiHBG052375.

Family and domain databases

CDDicd00033. CCP. 8 hits.
Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin-like.
IPR016186. C-type_lectin-like/link.
IPR018378. C-type_lectin_CS.
IPR016187. CTDL_fold.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 8 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 8 hits.
SM00034. CLECT. 1 hit.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 8 hits.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3MID1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGCPKGSWK PRLRSVVLGA AQLVWLSALI SELVNQKEVA AWTYNYSTKA
60 70 80 90 100
YSWNNSRAFC KRHFTDLVAI QNKNEIAHLN DVIPYVNSYY WIGIRKINNK
110 120 130 140 150
WTWVGTNKTL TAEAENWADN EPNNKRNNQD CVEIYIKSNS APGKWNDEPC
160 170 180 190 200
FKRKRALCYT ASCQDMSCNS QGECIETIGS YTCSCYPGFY GPECEYVQEC
210 220 230 240 250
GKFDIPQHVL MNCSHPLGDF SFSSQCTFSC PEGYDLNGPS EMQCLASGIW
260 270 280 290 300
TNNPPQCKAV QCQSLEAPLH GTMDCTHPLA AFAYDSSCKF ECQPGYRMRG
310 320 330 340 350
SDILHCTDSG QWSEPLPTCE AIACEPLESP LHGSMDCFPS TGAFGYNSSC
360 370 380 390 400
TFRCTEGFVL MGNDAIHCAD LGQWTAPAPV CEALQCQEFP VPSKAQVSCS
410 420 430 440 450
DPFGTLKYQS ACSFSCDEGS LLVGASVIRC LATGHWSEAP PECQAVSCTP
460 470 480 490 500
LLSPENGTMT CIQPLGHSNY KSTCQFMCDE GFYLSGPERL DCSPSGHWTG
510 520 530 540 550
SPPMCEAIKC PEIFAPEQGS LDCSHVHGEF SVGSTCHFSC NEEFELLGSR
560 570 580 590 600
NVECTVSGRW SAPPPTCKGV TSLPVPSVRC PALTTPGQGT MSCRHHLESF
610 620 630 640 650
GPNTTCYFGC KTGFTLRGAN SLRCGASGQW TAVTPVCRAV KCSELHMDTA
660 670 680 690 700
VAMNCSNPWG NFSYGSTCAF HCPEGQSLNG SARTTCGEDG HWSDAMPTCQ
710 720 730 740 750
GTLTIQEALT YLGGALASTT GLAVGGTLLA LLRKRLRKKD DGKCPLNPHS
760
HLGTYGVFTN AAYDPTP
Length:767
Mass (Da):83,340
Last modified:October 25, 2005 - v1
Checksum:i52E5A9BB8C6912F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101919 mRNA. Translation: AAI01920.1.
UniGeneiRn.10012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC101919 mRNA. Translation: AAI01920.1.
UniGeneiRn.10012.

3D structure databases

ProteinModelPortaliQ3MID1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003759.

Proteomic databases

PaxDbiQ3MID1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi3656. Selp.

Phylogenomic databases

eggNOGiENOG410IS44. Eukaryota.
ENOG410Y5JF. LUCA.
HOVERGENiHBG052375.

Family and domain databases

CDDicd00033. CCP. 8 hits.
Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin-like.
IPR016186. C-type_lectin-like/link.
IPR018378. C-type_lectin_CS.
IPR016187. CTDL_fold.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 8 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 8 hits.
SM00034. CLECT. 1 hit.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 8 hits.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 8 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ3MID1_RAT
AccessioniPrimary (citable) accession number: Q3MID1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2005
Last sequence update: October 25, 2005
Last modified: November 30, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.