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Q3MID1 (Q3MID1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Selp protein EMBL AAI01920.1
Gene names
Name:Selp EMBL AAI01920.1 RGD 3656
OrganismRattus norvegicus (Rat) EMBL AAI01920.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length767 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 C-type lectin domain. SAAS SAAS001304

Ontologies

Keywords
   DomainEGF-like domain SAAS SAAS000436
Repeat SAAS SAAS001304
Sushi SAAS SAAS000436
   LigandLectin SAAS SAAS001304
   PTMDisulfide bond SAAS SAAS000436
Gene Ontology (GO)
   Biological_processcell adhesion

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3MID1 [UniParc].

Last modified October 25, 2005. Version 1.
Checksum: 52E5A9BB8C6912F6

FASTA76783,340
        10         20         30         40         50         60 
MAGCPKGSWK PRLRSVVLGA AQLVWLSALI SELVNQKEVA AWTYNYSTKA YSWNNSRAFC 

        70         80         90        100        110        120 
KRHFTDLVAI QNKNEIAHLN DVIPYVNSYY WIGIRKINNK WTWVGTNKTL TAEAENWADN 

       130        140        150        160        170        180 
EPNNKRNNQD CVEIYIKSNS APGKWNDEPC FKRKRALCYT ASCQDMSCNS QGECIETIGS 

       190        200        210        220        230        240 
YTCSCYPGFY GPECEYVQEC GKFDIPQHVL MNCSHPLGDF SFSSQCTFSC PEGYDLNGPS 

       250        260        270        280        290        300 
EMQCLASGIW TNNPPQCKAV QCQSLEAPLH GTMDCTHPLA AFAYDSSCKF ECQPGYRMRG 

       310        320        330        340        350        360 
SDILHCTDSG QWSEPLPTCE AIACEPLESP LHGSMDCFPS TGAFGYNSSC TFRCTEGFVL 

       370        380        390        400        410        420 
MGNDAIHCAD LGQWTAPAPV CEALQCQEFP VPSKAQVSCS DPFGTLKYQS ACSFSCDEGS 

       430        440        450        460        470        480 
LLVGASVIRC LATGHWSEAP PECQAVSCTP LLSPENGTMT CIQPLGHSNY KSTCQFMCDE 

       490        500        510        520        530        540 
GFYLSGPERL DCSPSGHWTG SPPMCEAIKC PEIFAPEQGS LDCSHVHGEF SVGSTCHFSC 

       550        560        570        580        590        600 
NEEFELLGSR NVECTVSGRW SAPPPTCKGV TSLPVPSVRC PALTTPGQGT MSCRHHLESF 

       610        620        630        640        650        660 
GPNTTCYFGC KTGFTLRGAN SLRCGASGQW TAVTPVCRAV KCSELHMDTA VAMNCSNPWG 

       670        680        690        700        710        720 
NFSYGSTCAF HCPEGQSLNG SARTTCGEDG HWSDAMPTCQ GTLTIQEALT YLGGALASTT 

       730        740        750        760 
GLAVGGTLLA LLRKRLRKKD DGKCPLNPHS HLGTYGVFTN AAYDPTP

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Prostate EMBL AAI01920.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC101919 mRNA. Translation: AAI01920.1.
IPIIPI00205216.
UniGeneRn.10012.

3D structure databases

ProteinModelPortalQ3MID1.
SMRQ3MID1. Positions 42-199.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD3656. Selp.

Phylogenomic databases

HOVERGENHBG052375.
InParanoidQ3MID1.

Gene expression databases

GenevestigatorQ3MID1.

Family and domain databases

Gene3D3.10.100.10. 1 hit.
InterProIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR000742. EG-like_dom.
IPR013032. EGF-like_CS.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 8 hits.
[Graphical view]
PRINTSPR00343. SELECTIN.
SMARTSM00032. CCP. 8 hits.
SM00034. CLECT. 1 hit.
SM00181. EGF. 1 hit.
[Graphical view]
SUPFAMSSF56436. C-type_lectin_fold. 1 hit.
SSF57535. Complement_control_module. 8 hits.
PROSITEPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 8 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3MID1_RAT
AccessionPrimary (citable) accession number: Q3MID1
Entry history
Integrated into UniProtKB/TrEMBL: October 25, 2005
Last sequence update: October 25, 2005
Last modified: April 3, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info