Q3MDZ8 (Q3MDZ8_ANAVT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

Ava_1164

Organism

Anabaena variabilis (strain ATCC 29413 / PCC 7937) [Complete proteome] [HAMAP]

Taxonomic identifier

240292 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Nostocales › Nostocaceae › Anabaena

Protein attributes

Sequence length	416 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS013325
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3MDZ8 [UniParc]. Last modified October 25, 2005. Version 1. Checksum: CB69DE616301862A	FASTA	416	47,332
	10 20 30 40 50 60 MPATSFYADA AYNTQKSRQA LDPDIAIDDS DLSVDEIQEL EIAAADPATF GASANRRSTD 70 80 90 100 110 120 LVRLYLQEIG RVRLLGRDEE VSEAQKVQRY LKLRVVLANA AKQGDEVATP YLHLIEVQER 130 140 150 160 170 180 LASELGHRPS LERWAATAGI NLCDLKPILS EGKRRWAEIA KMTVEELEKM QSQGLQSKEH 190 200 210 220 230 240 MIKANLRLVV SVAKKYQNRG LELLDLVQEG TLGLERAVEK FDPTKGYRFS TYAYWWIRQG 250 260 270 280 290 300 ITRAIATSSR TIRLPVHITE KLNKIKKAQR KIAQEKGRTP TLEDLAIELD MTPTQVREVL 310 320 330 340 350 360 LRVPRSVSLE TKVGKDKDTE LGELLETDGV TPEEMLMRES LQRDLQHLLA DLTSRERDVI 370 380 390 400 410 LMRFGLADGH PYSLAEIGRA LDLSRERVRQ IESKALQKLR QPKRRNLIRD YLESLS

References

[1]

"Complete sequence of Anabaena variabilis ATCC 29413." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Schmutz J., Larimer F., Land M., Kyrpides N., Mavrommatis K., Richardson P. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 29413 / PCC 7937.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000117 Genomic DNA. Translation: ABA20788.1.
RefSeq	YP_321683.1. NC_007413.1.
3D structure databases
ProteinModelPortal	Q3MDZ8.
SMR	Q3MDZ8. Positions 171-246.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3MDZ8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3683360.
GenomeReviews	Gene locus Ava_1164 in contig CP000117_GR.
KEGG	ava:Ava_1164.
NMPDR	fig|240292.3.peg.1689.
PATRIC	35422846. VBIAnaVar43351_1985.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q3MDZ8.
ProtClustDB	PRK07598.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3MDZ8_ANAVT

Accession

Primary (citable) accession number: Q3MDZ8

Entry history

Integrated into UniProtKB/TrEMBL:	October 25, 2005
Last sequence update:	October 25, 2005
Last modified:	December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)