Q3MAB0 (IDI2_ANAVT) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 40.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Isopentenyl-diphosphate delta-isomerase Short name=IPP isomerase EC=5.3.3.2 Alternative name(s): Isopentenyl pyrophosphate isomerase | ||||
| Gene names |
| ||||
| Organism | Anabaena variabilis (strain ATCC 29413 / PCC 7937) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 240292 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Cyanobacteria › Nostocales › Nostocaceae › Anabaena |
Protein attributes
| Sequence length | 350 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) By similarity. HAMAP MF_00354 |
| Catalytic activity | Isopentenyl diphosphate = dimethylallyl diphosphate. HAMAP MF_00354 |
| Cofactor | FMN By similarity. HAMAP MF_00354 NADPH By similarity. HAMAP MF_00354 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00354. |
| Sequence similarities | Belongs to the IPP isomerase type 2 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Isoprene biosynthesis |
| Cellular component | Cytoplasm |
| Ligand | FMN Flavoprotein NADP |
| Molecular function | Isomerase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | isoprenoid biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | FMN binding Inferred from electronic annotation. Source: InterPro isopentenyl-diphosphate delta-isomerase activityInferred from electronic annotation. Source: EC oxidoreductase activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 350 | 350 | Isopentenyl-diphosphate delta-isomerase HAMAP MF_00354 | PRO_0000229493 | |||
Sequences
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References
| [1] | "Complete sequence of Anabaena variabilis ATCC 29413." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Schmutz J., Larimer F., Land M., Kyrpides N., Mavrommatis K., Richardson P. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 29413 / PCC 7937. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000117 Genomic DNA. Translation: ABA22076.1. |
| RefSeq | YP_322971.1. NC_007413.1. |
3D structure databases | |
| ProteinModelPortal | Q3MAB0. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q3MAB0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 3682851. |
| GenomeReviews | Gene locus Ava_2461 in contig CP000117_GR. |
| KEGG | ava:Ava_2461. |
| NMPDR | fig|240292.3.peg.1518. |
| PATRIC | 35425769. VBIAnaVar43351_3434. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG1304. |
| HOGENOM | HBG354479. |
| OMA | GSQRAAI. |
| PhylomeDB | Q3MAB0. |
| ProtClustDB | PRK05437. |
Enzyme and pathway databases | |
| BioCyc | AVAR240292:AVA_2461-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00354. Idi_2. [Tree] |
| InterPro | IPR013785. Aldolase_TIM. IPR000262. FMN-dep_DH. IPR011179. IPdP_isomerase. [Graphical view] |
| Gene3D | G3DSA:3.20.20.70. Aldolase_TIM. 1 hit. |
| KO | K01823. |
| PANTHER | PTHR10578:SF3. IPdP_isomerase. 1 hit. |
| Pfam | PF01070. FMN_dh. 2 hits. [Graphical view] |
| PIRSF | PIRSF003314. IPP_isomerase. 1 hit. |
| TIGRFAMs | TIGR02151. IPP_isom_2. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | IDI2_ANAVT | ||||||||
| Accession | Primary (citable) accession number: Q3MAB0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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