Q3M8I9 (Q3M8I9_ANAVT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Diaminopimelate epimerase 2 HAMAP MF_00197
Short name=DAP epimerase 2 HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197

Gene names

Name:	dapF2 HAMAP MF_00197
Ordered Locus Names:	Ava_3088

Organism

Anabaena variabilis (strain ATCC 29413 / PCC 7937) [Complete proteome] [HAMAP]

Taxonomic identifier

240292 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Nostocales › Nostocaceae › Anabaena

Protein attributes

Sequence length	282 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510
Subcellular location	Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.
Sequence similarities	Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis HAMAP MF_00197 SAAS SAAS018510
Cellular component	Cytoplasm HAMAP MF_00197 SAAS SAAS018510
Molecular function	Isomerase HAMAP MF_00197 SAAS SAAS018510 EMBL ABA22697.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	78	1	By similarity HAMAP MF_00197
	Active site	227	1	By similarity HAMAP MF_00197

Sequences

	Sequence		Length	Mass (Da)
	Q3M8I9 [UniParc]. Last modified October 25, 2005. Version 1. Checksum: 96C99FAA8879FF20	FASTA	282	30,635
	10 20 30 40 50 60 MGKMAIEFTK YHGLGNDFIL IDNRASKTPA ITPEKAVEMC DRHFGIGADG VIFALPGENG 70 80 90 100 110 120 TDYTMRIFNS DGSEPEMCGN GIRCLAAFLA DLEGLSRNKD TYRIHTLAGV ITPQLTPDGQ 130 140 150 160 170 180 IKVDMGLPRL LAGEIPTNIA AADQKVINQP LEVEGKTWEV TCVSMGNPHC ITFVEDVAAI 190 200 210 220 230 240 PLETIGPKFE HHPAFPQRTN TEFIQVVSRD YLKMRVWERG AGITLACGTG ACASLVAAVL 250 260 270 280 TGRSDRLATV ELPGGPLEIE WSEVDQRIYM TGPADRVFTG KL

References

[1]

"Complete sequence of Anabaena variabilis ATCC 29413." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Schmutz J., Larimer F., Land M., Kyrpides N., Mavrommatis K., Richardson P. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 29413 / PCC 7937.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000117 Genomic DNA. Translation: ABA22697.1.
RefSeq	YP_323592.1. NC_007413.1.
3D structure databases
ProteinModelPortal	Q3M8I9.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3M8I9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3681010.
GenomeReviews	Gene locus Ava_3088 in contig CP000117_GR.
KEGG	ava:Ava_3088.
NMPDR	fig|240292.3.peg.3161.
PATRIC	35427159. VBIAnaVar43351_4121.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0253.
HOGENOM	HBG399442.
OMA	FMTGPAT.
PhylomeDB	Q3M8I9.
ProtClustDB	PRK00450.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR018510. DAP_epimerase_AS. IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
PROSITE	PS01326. DAP_EPIMERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3M8I9_ANAVT

Accession

Primary (citable) accession number: Q3M8I9

Entry history

Integrated into UniProtKB/TrEMBL:	October 25, 2005
Last sequence update:	October 25, 2005
Last modified:	December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)