Reviewed,
UniProtKB/Swiss-Prot Q3M502 (SYGA_ANAVT)
Last modified
February 9, 2010.
Version 28.
History...
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Glycyl-tRNA synthetase alpha subunit EC=6.1.1.14 Alternative name(s): Glycine--tRNA ligase alpha subunit Short name=GlyRS | ||||
| Gene names |
| ||||
| Organism | Anabaena variabilis (strain ATCC 29413 / PCC 7937) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 240292 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Cyanobacteria › Nostocales › Nostocaceae › Anabaena |
Protein attributes
| Sequence length | 294 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Catalytic activity | ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). HAMAP MF_00254 |
| Subunit structure | Tetramer of two alpha and two beta subunits By similarity. HAMAP MF_00254 |
| Subcellular location | |
| Sequence similarities | Belongs to the class-II aminoacyl-tRNA synthetase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein biosynthesis |
| Cellular component | Cytoplasm |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Aminoacyl-tRNA synthetase Ligase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | glycyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | ATP binding Inferred from electronic annotation. Source: HAMAP glycine-tRNA ligase activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 294 | 294 | Glycyl-tRNA synthetase alpha subunit HAMAP MF_00254 | PRO_1000047396 | |||
Sequences
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References
| [1] | "Complete sequence of Anabaena variabilis ATCC 29413." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Schmutz J., Larimer F., Land M., Kyrpides N., Mavrommatis K., Richardson P. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000117 Genomic DNA. Translation: ABA23934.1. |
| RefSeq | YP_324829.1. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1J5W based on UniProtKB Q9WY59. |
| SMR | Q3M502. Positions 1-277. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q3M502. |
Genome annotation databases | |
| GeneID | 3680678. |
| GenomeReviews | Gene locus Ava_4336 in contig CP000117_GR. |
| KEGG | ava:Ava_4336. |
| NMPDR | fig|240292.3.peg.4626. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0752. |
| HOGENOM | HBG285316. |
| OMA | CRRPTDG. |
| PhylomeDB | Q3M502. |
Enzyme and pathway databases | |
| BioCyc | AVAR240292:AVA_4336-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00254. Gly_tRNA_synth_alpha. [Tree] |
| InterPro | IPR006194. Gly-tRNA-synth_II_heterodimer. IPR002310. Gly-tRNA_synth_IIc_asu. [Graphical view] |
| Pfam | PF02091. tRNA-synt_2e. 1 hit. [Graphical view] |
| PRINTS | PR01044. TRNASYNTHGA. |
| TIGRFAMs | TIGR00388. glyQ. 1 hit. |
| PROSITE | PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | SYGA_ANAVT | ||||||||
| Accession | Primary (citable) accession number: Q3M502 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| Aminoacyl-tRNA synthetases List of aminoacyl-tRNA synthetase entries |
| SIMILARITY comments Index of protein domains and families |

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