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Q3KSM3 (RDRP_PRV) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
RNA-directed RNA polymerase

Short name=RdRp
EC=2.7.7.48
Alternative name(s):
RNA replicase
OrganismPieris rapae virus
Taxonomic identifier327392 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeunclassified Nodaviridae
Virus hostPieris rapae (Small white butterfly) (Artogeia rapae) [TaxID: 64459]

Protein attributes

Sequence length1014 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2 Potential.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the nodaviridae RNA polymerase family.

Contains 1 RdRp catalytic domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10141014RNA-directed RNA polymerase
PRO_0000223688

Regions

Domain618 – 740123RdRp catalytic

Sequences

Sequence LengthMass (Da)Tools
Q3KSM3 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 0691D5F6E57F3D12

FASTA1,014114,607
        10         20         30         40         50         60 
MSSVIKTIVV KTLQCTVKCV CVGVRQQYGL LRRHPKTIAC ALVGGIIAHD VLHLYAAVYR 

        70         80         90        100        110        120 
VENPWEFVPT EGPRGVIVLR VYNALRFTAA KWRWNCWTIF GKFPFNSEQF SRIMETSTER 

       130        140        150        160        170        180 
KPDLRPLLVP AHETIEVYPC NNIHSHPRSA EFRSSANEYL VRSVRRAGYP PYVVSSSKRD 

       190        200        210        220        230        240 
FCDGNRFFYC PKDFGMQFRN DPISNNHALV FTDVDYYANM NRWLQLFLPT CLYTLVPTRL 

       250        260        270        280        290        300 
NYSNDEFAYR FENNEIVYNV TGGGEYRHSL WDYKGDTVTV VDEYGNLLIF DIEQRRVQGD 

       310        320        330        340        350        360 
EQHRLIWLLP KAKITDPLWI VGPTEWYDKL LVRKTVQQGR LKILWEPIAD DLSIGLHGSN 

       370        380        390        400        410        420 
YSVSLKGELF EAIRTRISCK DSTPYVSDVE RMLREAKHKN FLTDAPILYH CFQDDVIIRP 

       430        440        450        460        470        480 
NVVKTGSFPV TYNAIPKKAP SVTEDPKMPG QVVTTPLVSQ PALFAGKGFN ADKACIEGRI 

       490        500        510        520        530        540 
EKVRNVTKFP IKYVRYAAEF VKLVIPETIA GTGVPNSIGM IREEQDKVAQ RARFDRVAPI 

       550        560        570        580        590        600 
MSTQTENSIK AFIKTEMYAA AKAPRNISTM APEITIQSSA YSLPMAKIFK KIPWYCPGKN 

       610        620        630        640        650        660 
PKEITLRLAE VCLQDPDHEL EEGDYTCMDG TQSPDYSDLL LLPIYMRYFA KQYRGQFKNL 

       670        680        690        700        710        720 
YNQIYKQRAT TSSGVPYNPE MTIRSGSSIT THAGTLNNAF NIYAALRDMG YDETTAWDKV 

       730        740        750        760        770        780 
GAVFGDDSLN ANHQGEFHSY IEHVTKVLGM RYKSNLRERG QPVLFLGRYF VDPITSYDSF 

       790        800        810        820        830        840 
ADPMRTIGKL HATANKNVSV EQGAANKAHG YITTDSKTPI IGAWARRVLE ITKKKFKNGT 

       850        860        870        880        890        900 
GEEQYRCSNA WPQKDEAAIR AAMAAVLEVD EAQLIAQNEA VLKVNSLDQF PVVFDTYYDH 

       910        920        930        940        950        960 
KQLAEVDGQL VGTDLHIKEE DERQPETSID SVPSTGPPPS NGDPNAGGKP TDGPSKGKRK 

       970        980        990       1000       1010 
VKGRRPRTAG DPATLRLTDA GSSRRVKPPR KLRPEAKRGG RPIETLVFKN SSLS 

« Hide

References

[1]"Sequence of the non-structural protein gene encoded by RNA1 of a new alpha noda-like virus isolated from Pieris rapae larvae in China."
Liu C., Zhang J., Yi F., Wang J., Wang X., Hu Y.
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY962576 Genomic RNA. Translation: AAY27743.1.

3D structure databases

ProteinModelPortalQ3KSM3.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ3KSM3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view]
PfamPF00680. RdRP_1. 1 hit.
[Graphical view]
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRDRP_PRV
AccessionPrimary (citable) accession number: Q3KSM3
Entry history
Integrated into UniProtKB/Swiss-Prot: February 21, 2006
Last sequence update: November 8, 2005
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families