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Q3KSM3

- RDRP_PRV

UniProt

Q3KSM3 - RDRP_PRV

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Protein
RNA-directed RNA polymerase
Gene
N/A
Organism
Pieris rapae virus
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2 Reviewed prediction.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. RNA-directed RNA polymerase activity Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

  1. transcription, DNA-templated Source: InterPro
  2. viral RNA genome replication Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-directed RNA polymerase (EC:2.7.7.48)
Short name:
RdRp
Alternative name(s):
RNA replicase
OrganismiPieris rapae virus
Taxonomic identifieri327392 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeunclassified Nodaviridae
Virus hostiPieris rapae (Small white butterfly) (Artogeia rapae) [TaxID: 64459]

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10141014RNA-directed RNA polymerase
PRO_0000223688Add
BLAST

Proteomic databases

PRIDEiQ3KSM3.

Structurei

3D structure databases

ProteinModelPortaliQ3KSM3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini618 – 740123RdRp catalytic
Add
BLAST

Sequence similaritiesi

Family and domain databases

InterProiIPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view]
PfamiPF00680. RdRP_1. 1 hit.
[Graphical view]
PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3KSM3-1 [UniParc]FASTAAdd to Basket

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MSSVIKTIVV KTLQCTVKCV CVGVRQQYGL LRRHPKTIAC ALVGGIIAHD     50
VLHLYAAVYR VENPWEFVPT EGPRGVIVLR VYNALRFTAA KWRWNCWTIF 100
GKFPFNSEQF SRIMETSTER KPDLRPLLVP AHETIEVYPC NNIHSHPRSA 150
EFRSSANEYL VRSVRRAGYP PYVVSSSKRD FCDGNRFFYC PKDFGMQFRN 200
DPISNNHALV FTDVDYYANM NRWLQLFLPT CLYTLVPTRL NYSNDEFAYR 250
FENNEIVYNV TGGGEYRHSL WDYKGDTVTV VDEYGNLLIF DIEQRRVQGD 300
EQHRLIWLLP KAKITDPLWI VGPTEWYDKL LVRKTVQQGR LKILWEPIAD 350
DLSIGLHGSN YSVSLKGELF EAIRTRISCK DSTPYVSDVE RMLREAKHKN 400
FLTDAPILYH CFQDDVIIRP NVVKTGSFPV TYNAIPKKAP SVTEDPKMPG 450
QVVTTPLVSQ PALFAGKGFN ADKACIEGRI EKVRNVTKFP IKYVRYAAEF 500
VKLVIPETIA GTGVPNSIGM IREEQDKVAQ RARFDRVAPI MSTQTENSIK 550
AFIKTEMYAA AKAPRNISTM APEITIQSSA YSLPMAKIFK KIPWYCPGKN 600
PKEITLRLAE VCLQDPDHEL EEGDYTCMDG TQSPDYSDLL LLPIYMRYFA 650
KQYRGQFKNL YNQIYKQRAT TSSGVPYNPE MTIRSGSSIT THAGTLNNAF 700
NIYAALRDMG YDETTAWDKV GAVFGDDSLN ANHQGEFHSY IEHVTKVLGM 750
RYKSNLRERG QPVLFLGRYF VDPITSYDSF ADPMRTIGKL HATANKNVSV 800
EQGAANKAHG YITTDSKTPI IGAWARRVLE ITKKKFKNGT GEEQYRCSNA 850
WPQKDEAAIR AAMAAVLEVD EAQLIAQNEA VLKVNSLDQF PVVFDTYYDH 900
KQLAEVDGQL VGTDLHIKEE DERQPETSID SVPSTGPPPS NGDPNAGGKP 950
TDGPSKGKRK VKGRRPRTAG DPATLRLTDA GSSRRVKPPR KLRPEAKRGG 1000
RPIETLVFKN SSLS 1014
Length:1,014
Mass (Da):114,607
Last modified:November 8, 2005 - v1
Checksum:i0691D5F6E57F3D12
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY962576 Genomic RNA. Translation: AAY27743.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY962576 Genomic RNA. Translation: AAY27743.1 .

3D structure databases

ProteinModelPortali Q3KSM3.
ModBasei Search...

Proteomic databases

PRIDEi Q3KSM3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view ]
Pfami PF00680. RdRP_1. 1 hit.
[Graphical view ]
PROSITEi PS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence of the non-structural protein gene encoded by RNA1 of a new alpha noda-like virus isolated from Pieris rapae larvae in China."
    Liu C., Zhang J., Yi F., Wang J., Wang X., Hu Y.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiRDRP_PRV
AccessioniPrimary (citable) accession number: Q3KSM3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 21, 2006
Last sequence update: November 8, 2005
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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