Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

LIM domain only 2

Gene

Lmo2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-8939236. RUNX1 regulates transcription of genes involved in differentiation of HSCs.

Names & Taxonomyi

Protein namesi
Submitted name:
LIM domain only 2Imported
Gene namesi
Name:Lmo2Imported
ORF Names:rCG_26710Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1307101. Lmo2.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000009401.

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 90LIM zinc-bindingInterPro annotationAdd BLAST63
Domaini92 – 154LIM zinc-bindingInterPro annotationAdd BLAST63

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00720000108603.
HOGENOMiHOG000232175.
HOVERGENiHBG054231.
KOiK15612.
OrthoDBiEOG091G0LKW.

Family and domain databases

InterProiView protein in InterPro
IPR001781. Znf_LIM.
PfamiView protein in Pfam
PF00412. LIM. 2 hits.
SMARTiView protein in SMART
SM00132. LIM. 2 hits.
PROSITEiView protein in PROSITE
PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 2 hits.

Sequencei

Sequence statusi: Complete.

Q3KRD2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSAIERKSL DPSEEPVDEV LQIPPSLLTC GGCQQNIGDR YFLKAIDQYW
60 70 80 90 100
HEDCLSCDLC GCRLGEVGRR LYYKLGRKLC RRDYLRLFGQ DGLCASCDKR
110 120 130 140 150
IRAYEMTMRV KDKVYHLECF KCAACQKHFC VGDRYLLINS DIVCEQDIYE

WTKINGII
Length:158
Mass (Da):18,340
Last modified:November 8, 2005 - v1
Checksum:i1B49302505528C93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07053146 Genomic DNA. No translation available.
BC105772 mRNA. Translation: AAI05773.1.
CH473949 Genomic DNA. Translation: EDL79682.1.
RefSeqiNP_001032435.2. NM_001037358.2.
NP_001231708.1. NM_001244779.1.
NP_001231709.1. NM_001244780.1.
NP_001231710.1. NM_001244781.1.
UniGeneiRn.155591.

Genome annotation databases

EnsembliENSRNOT00000083527; ENSRNOP00000075577; ENSRNOG00000009401.
ENSRNOT00000090365; ENSRNOP00000072744; ENSRNOG00000009401.
GeneIDi362176.
KEGGirno:362176.
UCSCiRGD:1307101. rat.

Similar proteinsi

Entry informationi

Entry nameiQ3KRD2_RAT
AccessioniPrimary (citable) accession number: Q3KRD2
Secondary accession number(s): F1LNA1
Entry historyiIntegrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: November 22, 2017
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported