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Protein
Submitted name:

LIM domain only 2

Gene

Lmo2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-8939236 RUNX1 regulates transcription of genes involved in differentiation of HSCs

Names & Taxonomyi

Protein namesi
Submitted name:
LIM domain only 2Imported
Gene namesi
Name:Lmo2Imported
ORF Names:rCG_26710Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1307101 Lmo2

Expressioni

Gene expression databases

BgeeiENSRNOG00000009401
ExpressionAtlasiQ3KRD2 baseline and differential

Structurei

3D structure databases

SMRiQ3KRD2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 90LIM zinc-bindingInterPro annotationAdd BLAST63
Domaini92 – 154LIM zinc-bindingInterPro annotationAdd BLAST63

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0490 Eukaryota
ENOG410YIJ3 LUCA
GeneTreeiENSGT00760000118921
HOGENOMiHOG000232175
HOVERGENiHBG054231
KOiK15612
OrthoDBiEOG091G0LKW

Family and domain databases

InterProiView protein in InterPro
IPR001781 Znf_LIM
PfamiView protein in Pfam
PF00412 LIM, 2 hits
SMARTiView protein in SMART
SM00132 LIM, 2 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 2 hits

Sequencei

Sequence statusi: Complete.

Q3KRD2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSAIERKSL DPSEEPVDEV LQIPPSLLTC GGCQQNIGDR YFLKAIDQYW
60 70 80 90 100
HEDCLSCDLC GCRLGEVGRR LYYKLGRKLC RRDYLRLFGQ DGLCASCDKR
110 120 130 140 150
IRAYEMTMRV KDKVYHLECF KCAACQKHFC VGDRYLLINS DIVCEQDIYE

WTKINGII
Length:158
Mass (Da):18,340
Last modified:November 8, 2005 - v1
Checksum:i1B49302505528C93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07053146 Genomic DNA No translation available.
BC105772 mRNA Translation: AAI05773.1
CH473949 Genomic DNA Translation: EDL79682.1
RefSeqiNP_001032435.2, NM_001037358.2
NP_001231708.1, NM_001244779.1
NP_001231709.1, NM_001244780.1
NP_001231710.1, NM_001244781.1
UniGeneiRn.155591

Genome annotation databases

EnsembliENSRNOT00000083527; ENSRNOP00000075577; ENSRNOG00000009401
ENSRNOT00000090365; ENSRNOP00000072744; ENSRNOG00000009401
GeneIDi362176
KEGGirno:362176
UCSCiRGD:1307101 rat

Similar proteinsi

Entry informationi

Entry nameiQ3KRD2_RAT
AccessioniPrimary (citable) accession number: Q3KRD2
Secondary accession number(s): F1LNA1
Entry historyiIntegrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: May 23, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health