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Q3KR72 (Q3KR72_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Actin-binding LIM protein 1 EMBL AAI05868.1
Gene names
Name:Ablim1 EMBL AAI05868.1 RGD 1565768
Synonyms:Ablim1_predicted RGD 1565768
OrganismRattus norvegicus (Rat) EMBL AAI05868.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length427 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processcytoskeleton organization

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3KR72 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 7F61B9D808B488FA

FASTA42748,701
        10         20         30         40         50         60 
MFTEGEEMYL QGSTVWHPDC KQSTKTEEKL RPTRTSSESI YSRPGSSIPG SPGHTIYAKV 

        70         80         90        100        110        120 
DNEILDYKDL AAIPKVKAIY DIERPDLITY EPFYTSGYED KQDRQSLGES PRTLSPTPSA 

       130        140        150        160        170        180 
EGFQDGRDRM IHRSTSQGSI NSPVYSRHSY TPTTSRSPQH FHRPDQGINI YRKPPIYKQH 

       190        200        210        220        230        240 
AALAAQNKAS EDIIKFSKFP AAQAPDPNEI PKIETDHWPG PPSLAAIGTD PRRRSSGREE 

       250        260        270        280        290        300 
DEEELLRRRQ LQEEQLMKLN SGLGQLILKE EMEKENRERA SLLASRYDSP LHSASHAPSS 

       310        320        330        340        350        360 
KTSSLPGYGK SGLHRPVSTD FAQYNSYGDV SGGVRDYQTL PDGHMPAMRM DRGVSMPNML 

       370        380        390        400        410        420 
EPKIFPYEML MVTNRGRNKI LRDVDRTRLE RHLAPEVFWE IFGMSIQEFD KLPLWRRNDM 


KKKAKLF

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Placenta EMBL AAI05868.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC105867 mRNA. Translation: AAI05868.1.
IPIIPI00388572.
UniGeneRn.40404.

3D structure databases

ProteinModelPortalQ3KR72.
SMRQ3KR72. Positions 1-28, 359-427.
ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000018647.
Q3KR72.

PTM databases

PhosphoSiteQ3KR72.

Proteomic databases

PaxDbQ3KR72.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD1565768. Ablim1.

Phylogenomic databases

eggNOGNOG302299.
HOGENOMHOG000285997.
HOVERGENHBG031499.

Gene expression databases

GenevestigatorQ3KR72.

Family and domain databases

Gene3D1.10.950.10. 1 hit.
InterProIPR003128. Villin_headpiece.
[Graphical view]
PfamPF02209. VHP. 1 hit.
[Graphical view]
SMARTSM00153. VHP. 1 hit.
[Graphical view]
SUPFAMSSF47050. VHP. 1 hit.
PROSITEPS51089. HP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio13951560.

Entry information

Entry nameQ3KR72_RAT
AccessionPrimary (citable) accession number: Q3KR72
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: April 3, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info