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Q3KHR0 (ALGL_PSEPF) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Alginate lyase

EC=4.2.2.3
Alternative name(s):
Poly(beta-D-mannuronate) lyase
Poly(mana) alginate lyase
Gene names
Name:algL
Ordered Locus Names:Pfl01_0953
OrganismPseudomonas fluorescens (strain Pf0-1) [Complete proteome] [HAMAP]
Taxonomic identifier205922 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length374 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity. HAMAP MF_00557

Catalytic activity

Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557

Subcellular location

Periplasm Potential HAMAP MF_00557.

Sequence similarities

Belongs to the polysaccharide lyase 5 family.

Ontologies

Keywords
   Cellular componentPeriplasm
   DomainSignal
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential
Chain27 – 374348Alginate lyase HAMAP MF_00557
PRO_5000001586

Sequences

Sequence LengthMass (Da)Tools
Q3KHR0 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: D133F033DC12D47C

FASTA37442,113
        10         20         30         40         50         60 
MRNPKLKTLL APTLLGLAIF AGTAQAAAPL RPPQGYFAPV DKFKTGDKSE GCDAMPTPYT 

        70         80         90        100        110        120 
GPLQFRSKYE GSDKARATLN VQSEKAFRDT TKDITTLERG TAKRVMQFMR DGRPEQLDCT 

       130        140        150        160        170        180 
LNWLTAWAKA DALMSKDFNH TGKSMRKWAL GSMASSYIRL KFSDSHPLAQ HQQEAQVIEA 

       190        200        210        220        230        240 
WFSKMADQVV SDWDNLPLEK TNNHSYWAAW SVMATSVATN RRDLFDWAVK EYKVGVNQVD 

       250        260        270        280        290        300 
ADGFLPNELK RQQRALAYHN YALPPLAMIA SFAQVNGVDL RQENNGALKR LGDRVLAGVK 

       310        320        330        340        350        360 
DPDQFEKKNG KEQDMTDLKQ DMKFAWLEPF CTLYTCSPDV IEKKHGMQPF KTFRLGGDLT 

       370 
KVYDPSHEKG NKGS 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000094 Genomic DNA. Translation: ABA72696.1.
RefSeqYP_346685.1. NC_007492.2.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ3KHR0.

Protein family/group databases

CAZyPL5. Polysaccharide Lyase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3715916.
GenomeReviewsGene locus Pfl01_0953 in contig CP000094_GR.
KEGGpfo:Pfl01_0953.
PATRIC19883987. VBIPseFlu44242_0970.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG42597.
HOGENOMHBG336064.
OMAAAWSVMA.
ProtClustDBPRK00325.

Enzyme and pathway databases

BioCycPFLU205922:PFL_0953-MONOMER.

Family and domain databases

HAMAPMF_00557. Alginate_lyase.
[Tree]
InterProIPR022859. Alginate_lyase.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KOK01729.
PfamPF05426. Alginate_lyase. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameALGL_PSEPF
AccessionPrimary (citable) accession number: Q3KHR0
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 8, 2005
Last modified: January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families