Q3KH02 (Q3KH02_PSEPF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL ABA72954.1

Gene names

Ordered Locus Names:

Pfl01_1211

Organism

Pseudomonas fluorescens (strain Pf0-1) [Complete proteome] [HAMAP] EMBL ABA72954.1

Taxonomic identifier

205922 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABA72954.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3KH02 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 8DC12395486434D8	FASTA	562	63,023
	10 20 30 40 50 60 MKDFAGLYAE LDATTSSNAK LAAMQTYFAQ AQPQDAAWAV YFLSGGRPRQ LVPVRILRDL 70 80 90 100 110 120 AVEMSGLAPW LFEESYQAVG DLAETISLVL PEHPYTSEAG LAEWIEDKLL PLRGETPEYL 130 140 150 160 170 180 AHQLPALWAQ LDRPSLMLCI KLITGSFRVG VSKLLVTRAL ASMAGLDSKR VAQRLVGYTD 190 200 210 220 230 240 LSNRPNAASY LKLIAPESSD EHAQRGGQPY PFFLAHALAQ PVETFEALLG PASNWQVEWK 250 260 270 280 290 300 WDGIRAQVVK RDGKLWVWSR GEELVTERFP ELDTLVHGLP DGTVIDGEIV VWKNRRPVTE 310 320 330 340 350 360 DAFDPQSTEA PAVQPFALLQ QRIGRKSLDR KILEDAPVVV LAYDLLEWQG EDWRNQPQAR 370 380 390 400 410 420 RREQLEQVIA RCNNPVLLPS PILTGDDWFD LARQREASRR LGVEGMMLKA RDAMYGVGRT 430 440 450 460 470 480 KDMGVWWKWK VDPFSVDAVL IYAQRGHGRR ASLYSDYTFA VWDGPPGASA RALVPFAKAY 490 500 510 520 530 540 SGLTDAEMRE VDSIVRKTTV EKFGPVSSVK PSLVFELGFE GIALSRRHKS GIAVRFPRML 550 560 RWRQDKTVDE ADSLATLQNL LV

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pf0-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000094 Genomic DNA. Translation: ABA72954.1.
RefSeq	YP_346943.1. NC_007492.2.
3D structure databases
ProteinModelPortal	Q3KH02.
ModBase	Search...
Protein-protein interaction databases
STRING	205922.Pfl01_1211.
PTM databases
PhosSite	P0906716.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABA72954; ABA72954; Pfl01_1211.
GeneID	3717060.
KEGG	pfo:Pfl01_1211.
PATRIC	19884515. VBIPseFlu44242_1232.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PFLU205922:GJBD-1232-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3KH02_PSEPF

Accession

Primary (citable) accession number: Q3KH02

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)