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Q3KEG6

- Q3KEG6_PSEPF

UniProt

Q3KEG6 - Q3KEG6_PSEPF

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Pfl01_2097

Organism
Pseudomonas fluorescens (strain Pf0-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (08 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPFLU205922:GJBD-2136-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Pfl01_2097Imported
    OrganismiPseudomonas fluorescens (strain Pf0-1)Imported
    Taxonomic identifieri205922 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002704: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi205922.Pfl01_2097.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3KEG6.
    SMRiQ3KEG6. Positions 555-844.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3KEG6-1 [UniParc]FASTAAdd to Basket

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    MSRNLDDYNR MRDFSATSEP AAGHRRGKKP AGDHALQFCI QKHDASHLHY    50
    DFRLELDGAL KSWAVPKGPS LDPKVKRLAV HVEDHPLDYA TFEGSIPEGH 100
    YGAGDVIVWD RGVWIPLEDP EKAYAKGKLK FELQGEKLAG VWNLVRTHMP 150
    GKKEQWFLIK HQDGAARPQS DYDVLVAEPD SVLSERTIVD KPRLSAKQVK 200
    PLQGPAKAPR KSASGKLTGA HKAKIPAQLK PQLATLVESA PEGDWQYEIK 250
    FDGYRIMARI DQDEVQLFTR NGHDWTHKLP KQAQALAALG LESAWLDGEM 300
    VVADADGVPD FQALQNAFDS GRSENIVYYL FDLPYLNGVD LREVAVEERR 350
    AALATVLKTH QDPLLRFSEA FDETPQALLN SACQMRMEGL IGKRLGSPYV 400
    SRRSSDWIKL KCKHRQEFVI VGYTDPKGAR SSFGALLLGL HDRDSGELRY 450
    AGKVGTGFNE TTLKSILAQL KPLRVKKPAV ANPPTGFEAK GVHWLKPSLL 500
    AEVAFAEMTQ DGSVRHAVFH GLREDKPAKD ITEERAKPMN TSKTESTAPS 550
    QSGLADGKVR ITHPDRVIDA SSGTTKMQLA EYYASVAEWI LPQLKDRPVA 600
    LVRAPDGIAG DLFFQKNAEH LAIPGIRTLD KELTGQPVML INNAEALIGA 650
    VQMSTVELHT WNATTTDLDK PDRFVLDLDP DPALPWKSMI EATALTLTVL 700
    DELGLKAFLK TSGGKGIHLV VPLTRKHGWD EVKDFSHAIV THMAKLLPER 750
    FSAVSGPKNR VGRIFIDYLR NGLGATTICA YAARTREGLP VSVPLFREEV 800
    GEIKGADQWN VHNVHERLAE VGDEPWADIK KTRQSITAEM RKRVGMKK 848
    Length:848
    Mass (Da):94,072
    Last modified:November 8, 2005 - v1
    Checksum:iBC79862D27B7308E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000094 Genomic DNA. Translation: ABA73840.1.
    RefSeqiYP_347829.1. NC_007492.2.

    Genome annotation databases

    EnsemblBacteriaiABA73840; ABA73840; Pfl01_2097.
    GeneIDi3715990.
    KEGGipfo:Pfl01_2097.
    PATRICi19886345. VBIPseFlu44242_2131.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000094 Genomic DNA. Translation: ABA73840.1 .
    RefSeqi YP_347829.1. NC_007492.2.

    3D structure databases

    ProteinModelPortali Q3KEG6.
    SMRi Q3KEG6. Positions 555-844.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 205922.Pfl01_2097.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA73840 ; ABA73840 ; Pfl01_2097 .
    GeneIDi 3715990.
    KEGGi pfo:Pfl01_2097.
    PATRICi 19886345. VBIPseFlu44242_2131.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PFLU205922:GJBD-2136-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Pf0-1Imported.

    Entry informationi

    Entry nameiQ3KEG6_PSEPF
    AccessioniPrimary (citable) accession number: Q3KEG6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 8, 2005
    Last sequence update: November 8, 2005
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3