Q3KEG6 (Q3KEG6_PSEPF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABA73840.1

Gene names

Ordered Locus Names:

Pfl01_2097

Organism

Pseudomonas fluorescens (strain Pf0-1) [Complete proteome] [HAMAP] EMBL ABA73840.1

Taxonomic identifier

205922 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	848 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABA73840.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3KEG6 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: BC79862D27B7308E	FASTA	848	94,072
	10 20 30 40 50 60 MSRNLDDYNR MRDFSATSEP AAGHRRGKKP AGDHALQFCI QKHDASHLHY DFRLELDGAL 70 80 90 100 110 120 KSWAVPKGPS LDPKVKRLAV HVEDHPLDYA TFEGSIPEGH YGAGDVIVWD RGVWIPLEDP 130 140 150 160 170 180 EKAYAKGKLK FELQGEKLAG VWNLVRTHMP GKKEQWFLIK HQDGAARPQS DYDVLVAEPD 190 200 210 220 230 240 SVLSERTIVD KPRLSAKQVK PLQGPAKAPR KSASGKLTGA HKAKIPAQLK PQLATLVESA 250 260 270 280 290 300 PEGDWQYEIK FDGYRIMARI DQDEVQLFTR NGHDWTHKLP KQAQALAALG LESAWLDGEM 310 320 330 340 350 360 VVADADGVPD FQALQNAFDS GRSENIVYYL FDLPYLNGVD LREVAVEERR AALATVLKTH 370 380 390 400 410 420 QDPLLRFSEA FDETPQALLN SACQMRMEGL IGKRLGSPYV SRRSSDWIKL KCKHRQEFVI 430 440 450 460 470 480 VGYTDPKGAR SSFGALLLGL HDRDSGELRY AGKVGTGFNE TTLKSILAQL KPLRVKKPAV 490 500 510 520 530 540 ANPPTGFEAK GVHWLKPSLL AEVAFAEMTQ DGSVRHAVFH GLREDKPAKD ITEERAKPMN 550 560 570 580 590 600 TSKTESTAPS QSGLADGKVR ITHPDRVIDA SSGTTKMQLA EYYASVAEWI LPQLKDRPVA 610 620 630 640 650 660 LVRAPDGIAG DLFFQKNAEH LAIPGIRTLD KELTGQPVML INNAEALIGA VQMSTVELHT 670 680 690 700 710 720 WNATTTDLDK PDRFVLDLDP DPALPWKSMI EATALTLTVL DELGLKAFLK TSGGKGIHLV 730 740 750 760 770 780 VPLTRKHGWD EVKDFSHAIV THMAKLLPER FSAVSGPKNR VGRIFIDYLR NGLGATTICA 790 800 810 820 830 840 YAARTREGLP VSVPLFREEV GEIKGADQWN VHNVHERLAE VGDEPWADIK KTRQSITAEM RKRVGMKK

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pf0-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000094 Genomic DNA. Translation: ABA73840.1.
RefSeq	YP_347829.1. NC_007492.2.
3D structure databases
ProteinModelPortal	Q3KEG6.
SMR	Q3KEG6. Positions 555-844.
ModBase	Search...
Protein-protein interaction databases
STRING	205922.Pfl01_2097.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABA73840; ABA73840; Pfl01_2097.
GeneID	3715990.
KEGG	pfo:Pfl01_2097.
PATRIC	19886345. VBIPseFlu44242_2131.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	PFLU205922:GJBD-2136-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3KEG6_PSEPF

Accession

Primary (citable) accession number: Q3KEG6

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)