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Q3KEG6

- Q3KEG6_PSEPF

UniProt

Q3KEG6 - Q3KEG6_PSEPF

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Protein
Submitted name: ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
Gene
Pfl01_2097
Organism
Pseudomonas fluorescens (strain Pf0-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPFLU205922:GJBD-2136-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Pfl01_2097Imported
OrganismiPseudomonas fluorescens (strain Pf0-1)Imported
Taxonomic identifieri205922 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002704: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi205922.Pfl01_2097.

Structurei

3D structure databases

ProteinModelPortaliQ3KEG6.
SMRiQ3KEG6. Positions 555-844.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3KEG6-1 [UniParc]FASTAAdd to Basket

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MSRNLDDYNR MRDFSATSEP AAGHRRGKKP AGDHALQFCI QKHDASHLHY    50
DFRLELDGAL KSWAVPKGPS LDPKVKRLAV HVEDHPLDYA TFEGSIPEGH 100
YGAGDVIVWD RGVWIPLEDP EKAYAKGKLK FELQGEKLAG VWNLVRTHMP 150
GKKEQWFLIK HQDGAARPQS DYDVLVAEPD SVLSERTIVD KPRLSAKQVK 200
PLQGPAKAPR KSASGKLTGA HKAKIPAQLK PQLATLVESA PEGDWQYEIK 250
FDGYRIMARI DQDEVQLFTR NGHDWTHKLP KQAQALAALG LESAWLDGEM 300
VVADADGVPD FQALQNAFDS GRSENIVYYL FDLPYLNGVD LREVAVEERR 350
AALATVLKTH QDPLLRFSEA FDETPQALLN SACQMRMEGL IGKRLGSPYV 400
SRRSSDWIKL KCKHRQEFVI VGYTDPKGAR SSFGALLLGL HDRDSGELRY 450
AGKVGTGFNE TTLKSILAQL KPLRVKKPAV ANPPTGFEAK GVHWLKPSLL 500
AEVAFAEMTQ DGSVRHAVFH GLREDKPAKD ITEERAKPMN TSKTESTAPS 550
QSGLADGKVR ITHPDRVIDA SSGTTKMQLA EYYASVAEWI LPQLKDRPVA 600
LVRAPDGIAG DLFFQKNAEH LAIPGIRTLD KELTGQPVML INNAEALIGA 650
VQMSTVELHT WNATTTDLDK PDRFVLDLDP DPALPWKSMI EATALTLTVL 700
DELGLKAFLK TSGGKGIHLV VPLTRKHGWD EVKDFSHAIV THMAKLLPER 750
FSAVSGPKNR VGRIFIDYLR NGLGATTICA YAARTREGLP VSVPLFREEV 800
GEIKGADQWN VHNVHERLAE VGDEPWADIK KTRQSITAEM RKRVGMKK 848
Length:848
Mass (Da):94,072
Last modified:November 8, 2005 - v1
Checksum:iBC79862D27B7308E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000094 Genomic DNA. Translation: ABA73840.1.
RefSeqiYP_347829.1. NC_007492.2.

Genome annotation databases

EnsemblBacteriaiABA73840; ABA73840; Pfl01_2097.
GeneIDi3715990.
KEGGipfo:Pfl01_2097.
PATRICi19886345. VBIPseFlu44242_2131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000094 Genomic DNA. Translation: ABA73840.1 .
RefSeqi YP_347829.1. NC_007492.2.

3D structure databases

ProteinModelPortali Q3KEG6.
SMRi Q3KEG6. Positions 555-844.
ModBasei Search...

Protein-protein interaction databases

STRINGi 205922.Pfl01_2097.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA73840 ; ABA73840 ; Pfl01_2097 .
GeneIDi 3715990.
KEGGi pfo:Pfl01_2097.
PATRICi 19886345. VBIPseFlu44242_2131.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PFLU205922:GJBD-2136-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Pf0-1Imported.

Entry informationi

Entry nameiQ3KEG6_PSEPF
AccessioniPrimary (citable) accession number: Q3KEG6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: May 14, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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