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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Pfl01_2097

Organism
Pseudomonas fluorescens (strain Pf0-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPFLU205922:GJBD-2136-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Pfl01_2097Imported
OrganismiPseudomonas fluorescens (strain Pf0-1)Imported
Taxonomic identifieri205922 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002704: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi205922.Pfl01_2097.

Structurei

3D structure databases

ProteinModelPortaliQ3KEG6.
SMRiQ3KEG6. Positions 555-844.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3KEG6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRNLDDYNR MRDFSATSEP AAGHRRGKKP AGDHALQFCI QKHDASHLHY
60 70 80 90 100
DFRLELDGAL KSWAVPKGPS LDPKVKRLAV HVEDHPLDYA TFEGSIPEGH
110 120 130 140 150
YGAGDVIVWD RGVWIPLEDP EKAYAKGKLK FELQGEKLAG VWNLVRTHMP
160 170 180 190 200
GKKEQWFLIK HQDGAARPQS DYDVLVAEPD SVLSERTIVD KPRLSAKQVK
210 220 230 240 250
PLQGPAKAPR KSASGKLTGA HKAKIPAQLK PQLATLVESA PEGDWQYEIK
260 270 280 290 300
FDGYRIMARI DQDEVQLFTR NGHDWTHKLP KQAQALAALG LESAWLDGEM
310 320 330 340 350
VVADADGVPD FQALQNAFDS GRSENIVYYL FDLPYLNGVD LREVAVEERR
360 370 380 390 400
AALATVLKTH QDPLLRFSEA FDETPQALLN SACQMRMEGL IGKRLGSPYV
410 420 430 440 450
SRRSSDWIKL KCKHRQEFVI VGYTDPKGAR SSFGALLLGL HDRDSGELRY
460 470 480 490 500
AGKVGTGFNE TTLKSILAQL KPLRVKKPAV ANPPTGFEAK GVHWLKPSLL
510 520 530 540 550
AEVAFAEMTQ DGSVRHAVFH GLREDKPAKD ITEERAKPMN TSKTESTAPS
560 570 580 590 600
QSGLADGKVR ITHPDRVIDA SSGTTKMQLA EYYASVAEWI LPQLKDRPVA
610 620 630 640 650
LVRAPDGIAG DLFFQKNAEH LAIPGIRTLD KELTGQPVML INNAEALIGA
660 670 680 690 700
VQMSTVELHT WNATTTDLDK PDRFVLDLDP DPALPWKSMI EATALTLTVL
710 720 730 740 750
DELGLKAFLK TSGGKGIHLV VPLTRKHGWD EVKDFSHAIV THMAKLLPER
760 770 780 790 800
FSAVSGPKNR VGRIFIDYLR NGLGATTICA YAARTREGLP VSVPLFREEV
810 820 830 840
GEIKGADQWN VHNVHERLAE VGDEPWADIK KTRQSITAEM RKRVGMKK
Length:848
Mass (Da):94,072
Last modified:November 8, 2005 - v1
Checksum:iBC79862D27B7308E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000094 Genomic DNA. Translation: ABA73840.1.
RefSeqiYP_347829.1. NC_007492.2.

Genome annotation databases

EnsemblBacteriaiABA73840; ABA73840; Pfl01_2097.
GeneIDi3715990.
KEGGipfo:Pfl01_2097.
PATRICi19886345. VBIPseFlu44242_2131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000094 Genomic DNA. Translation: ABA73840.1.
RefSeqiYP_347829.1. NC_007492.2.

3D structure databases

ProteinModelPortaliQ3KEG6.
SMRiQ3KEG6. Positions 555-844.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi205922.Pfl01_2097.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA73840; ABA73840; Pfl01_2097.
GeneIDi3715990.
KEGGipfo:Pfl01_2097.
PATRICi19886345. VBIPseFlu44242_2131.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPFLU205922:GJBD-2136-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Pf0-1Imported.

Entry informationi

Entry nameiQ3KEG6_PSEPF
AccessioniPrimary (citable) accession number: Q3KEG6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: March 4, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.