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Reviewed, UniProtKB/Swiss-Prot Q3KDW0 (XYLA_PSEPF)

Last modified June 16, 2009. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Xylose isomerase
    EC=5.3.1.5
Gene names
Name: xylA
Ordered Locus Names: Pfl01_2303
OrganismPseudomonas fluorescens (strain Pf0-1) [Complete proteome] [HAMAP]
Taxonomic identifier205922 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

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Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. HAMAP MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity.

Subunit structure

Homotetramer By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the xylose isomerase family.

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Ontologies

Keywords
   Biological processCarbohydrate metabolism
Pentose shunt
Xylose metabolism
   Cellular componentCytoplasm
   LigandMagnesium
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processD-xylose metabolic process

Inferred from electronic annotation. Source: HAMAP

pentose-phosphate shunt

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionmagnesium ion binding

Inferred from electronic annotation. Source: HAMAP

xylose isomerase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 438438Xylose isomerase HAMAP MF_00455
PRO_0000236966

Sites

Active site1001 By similarity
Active site1031 By similarity
Metal binding2311Magnesium 1 By similarity
Metal binding2671Magnesium 1 By similarity
Metal binding2671Magnesium 2 By similarity
Metal binding2701Magnesium 2 By similarity
Metal binding2951Magnesium 1 By similarity
Metal binding3061Magnesium 2 By similarity
Metal binding3081Magnesium 2 By similarity
Metal binding3381Magnesium 1 By similarity

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Sequences

Sequence LengthMass (Da)Tools
Q3KDW0-1 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 79AE75129BD04827

FASTA43849,447
        10         20         30         40         50         60 
MPYFPDIERI RYEGPASDSP LAFRHYDADK IILGKPMREH LRMAACYWHT FVWPGSDVFG 

        70         80         90        100        110        120 
AGTFKRPWQH AGDPMELAIG KAQAAFEFFS KLGIDYYCFH DTDVAPEGNS LKEYRNHFAQ 

       130        140        150        160        170        180 
MIDHLERHQE ESGIKLLWGT ANCFSNPRFA AGAASNPDPE VFACAAAQVF SAMNATQRLK 

       190        200        210        220        230        240 
GANYVLWGGR EGYETLLNTD LKREREQLGR FMRMVVEHKY KIGFKGDLLI EPKPQEPTKH 

       250        260        270        280        290        300 
QYDYDSATVF GFLQQFGLEK EIKVNIEANH ATLAGHSFHH EVATAVSLGI FGSIDANRGD 

       310        320        330        340        350        360 
PQNGWDTDQF PNSVEEMTLV TYEILKAGGF GNGGFNFDSK VRRQSLDETD LFHGHVGAMD 

       370        380        390        400        410        420 
VLALSLERAA AMVQNDQLQR LKDQRYAGWQ QPFGQSVLAG DFNLQSLAEH AFANELNPQA 

       430 
VSGRQEMLEN VVNRFIYR

« Hide

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References

[1]"Complete sequence of Pseudomonas fluorescens PfO-1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Saunders E.H., Schmutz J., Larimer F., Land M., Kyripides N., Anderson I., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000094 Genomic DNA. Translation: ABA74046.1.
RefSeqYP_348035.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3715586.
GenomeReviewsGene locus Pfl01_2303 in contig CP000094_GR.
KEGGpfo:Pfl01_2303.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ3KDW0.
OMAQ3KDW0. QFLIEPK.

Enzyme and pathway databases

BioCycPFLU205922:PFL_2303-MON.

Family and domain databases

HAMAPMF_00455.
[Tree]
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR012307. Xyl_isomerase-typ_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
IPR018115. Xylose_isomerase_AS.
[Graphical view]
Gene3DG3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit.
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameXYLA_PSEPF
AccessionPrimary (citable) accession number: Q3KDW0
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: November 8, 2005
Last modified: June 16, 2009
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents