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Q3K818 (Q3K818_PSEPF) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def EMBL ABA76086.1
Synonyms:def2 HAMAP MF_00163
Ordered Locus Names:Pfl01_4349
OrganismPseudomonas fluorescens (strain Pf0-1) [Complete proteome] [HAMAP] EMBL ABA76086.1
Taxonomic identifier205922 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1441 By similarity HAMAP MF_00163
Metal binding1011Iron By similarity HAMAP MF_00163
Metal binding1431Iron By similarity HAMAP MF_00163
Metal binding1471Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q3K818 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 82C03C283880C6AD

FASTA17919,977
        10         20         30         40         50         60 
MIREILKMGD ERLLRIAPPV PAEMLDSPEL WQLIDDMFQT MESVGGVGLA APQIGVDLQL 

        70         80         90        100        110        120 
VIFGFEHSER YPDAEAVPQT ILINPLITPL SPLMEEGFEG CLSVPGLRGA VDRYQQIRYE 

       130        140        150        160        170 
GVDPKGEPIV RVASGFHARV VQHECDHLIG RLYPSRITDF SKFGFTEVMF PDLDPNADD

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000094 Genomic DNA. Translation: ABA76086.1.
RefSeqYP_350077.1. NC_007492.2.

3D structure databases

ProteinModelPortalQ3K818.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ3K818.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3716867.
GenomeReviewsGene locus Pfl01_4349 in contig CP000094_GR.
KEGGpfo:Pfl01_4349.
PATRIC19890844. VBIPseFlu44242_4350.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAHNERYPD.
ProtClustDBPRK12846.

Enzyme and pathway databases

BioCycPFLU205922:PFL_4349-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3K818_PSEPF
AccessionPrimary (citable) accession number: Q3K818
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: December 14, 2011
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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