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Protein

Chromosome partition protein Smc

Gene

smc

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Required for chromosome condensation and partitioning.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi32 – 398ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-2592-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Chromosome partition protein SmcUniRule annotation
Gene namesi
Name:smcUniRule annotation
Ordered Locus Names:BURPS1710b_2592
OrganismiBurkholderia pseudomallei (strain 1710b)
Taxonomic identifieri320372 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
Proteomesi
  • UP000002700 Componenti: Chromosome I

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11701170Chromosome partition protein SmcPRO_0000409265Add
BLAST

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ3JR19.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili169 – 21547UniRule annotationAdd
BLAST
Coiled coili245 – 365121UniRule annotationAdd
BLAST
Coiled coili401 – 508108UniRule annotationAdd
BLAST
Coiled coili664 – 944281UniRule annotationAdd
BLAST
Coiled coili983 – 102038UniRule annotationAdd
BLAST

Domaini

Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.UniRule annotation

Sequence similaritiesi

Belongs to the SMC family.UniRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOGENOMiHOG000036391.
KOiK03529.
OrthoDBiEOG6WQD34.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_01894. Smc_prok.
InterProiIPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
IPR024704. SMC.
IPR010935. SMC_hinge.
IPR011890. SMC_prok.
[Graphical view]
PfamiPF06470. SMC_hinge. 1 hit.
PF02463. SMC_N. 1 hit.
[Graphical view]
PIRSFiPIRSF005719. SMC. 1 hit.
SMARTiSM00968. SMC_hinge. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF75553. SSF75553. 1 hit.
TIGRFAMsiTIGR02168. SMC_prok_B. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3JR19-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLSSIKLAG FKSFVDPTHF QVPGQLVGVV GPNGCGKSNI IDAVRWVLGE
60 70 80 90 100
SRASELRGES MQDVIFNGST TRKPGSRASV ELIFDNSDGR AAGQWGQYGE
110 120 130 140 150
IAVKRVLTRD GTSSYYINNL PARRRDIQDI FLGTGLGPRA YAIIGQGMIA
160 170 180 190 200
RIIEAKPEEL RVFLEEAAGV SKYKERRRET ENRLHDTREN LTRVEDIVRE
210 220 230 240 250
LGANLEKLEA QAVVATKYKE LVADGEEKQR LLWLLRKNEA AAEQDRQRRA
260 270 280 290 300
IGDAQIELDA QTAKLREVEA QLETLRVAHY SASDAMQGAQ GALYEANAEV
310 320 330 340 350
SRLEAQIKFI VESRNRVQAQ IAALVAQQEQ WRAQADKAQG DLEVAEEARA
360 370 380 390 400
VADEKAAIAE DDAAAKHDAL PALEARWRDA QTGLNDERGR IAQTEQALKL
410 420 430 440 450
EAAHQRNADQ QLQQLQQRHE RLKVEAGGLD APDEAQLEEL RMQLAEHEAM
460 470 480 490 500
LAEAQARLAD AQEALPRLDA QRRAAHERVQ AESAQIHQLE ARLAALKQLQ
510 520 530 540 550
ENVQTQGKIQ PWLDKHELGA LPRLWKKLHV EAGWETALEA VLRERLAALE
560 570 580 590 600
VSNLDWVKAF ATDAPPAKLA FYAPPAAGEP LAAPGALRPL LPLVRIDDAG
610 620 630 640 650
LRAVLNDWLG TVFVADDLAQ ALAARMQLPQ GGAFVVKAGH VVTRSGVQLY
660 670 680 690 700
AADSEQAGML ARAQEIENLT RQVRAQALLS DEAKAAAIRA EAAHTQASQA
710 720 730 740 750
LTEVRAQAER ATQRVHALQM DVLKLTQAHE RYTQRSTQIR EELEEIGAQI
760 770 780 790 800
EEQRALRAES EANFERHDAE LAELQARFED NQLAFESLDE TLTNARQEAR
810 820 830 840 850
ERERAATDAR FAARQSANRI DELKRSIQVA HEQAERVAAS LEDARAELET
860 870 880 890 900
INEQTAHTGL QDALEVRAAK EQALGAARAE LDDLTAKLRA ADEARLAAER
910 920 930 940 950
SLQPLRDRIT ELQLKEQAAR MTGEQFAEQL ATAEVDEAAL KEKLMPDMKP
960 970 980 990 1000
SYLQGEVTRI NNAINALGPV NMAALDELAA ASERKVFLDA QSADLTNAIE
1010 1020 1030 1040 1050
TLEDAIRKID QETRALLQAT FDEVNRHFSD LFPRLFGGGQ AKLIMTGDEI
1060 1070 1080 1090 1100
LDAGVQVMAQ PPGKKNATIH LLSGGEKALT ATALVFAMFQ LNPAPFCLLD
1110 1120 1130 1140 1150
EVDAPLDDAN TERFANLVRA MSDKTQFLFI SHNKIAMEMA QQLIGVTMQE
1160 1170
QGVSRIVAVD METAAGFAQN
Length:1,170
Mass (Da):129,041
Last modified:May 31, 2011 - v2
Checksum:iD2A219E3AEF0B32A
GO

Sequence cautioni

The sequence ABA47647.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000124 Genomic DNA. Translation: ABA47647.1. Different initiation.
RefSeqiWP_004527298.1. NC_007434.1.

Genome annotation databases

EnsemblBacteriaiABA47647; ABA47647; BURPS1710b_2592.
KEGGibpm:BURPS1710b_2592.
PATRICi19237696. VBIBurPse115837_2718.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000124 Genomic DNA. Translation: ABA47647.1. Different initiation.
RefSeqiWP_004527298.1. NC_007434.1.

3D structure databases

ProteinModelPortaliQ3JR19.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA47647; ABA47647; BURPS1710b_2592.
KEGGibpm:BURPS1710b_2592.
PATRICi19237696. VBIBurPse115837_2718.

Phylogenomic databases

HOGENOMiHOG000036391.
KOiK03529.
OrthoDBiEOG6WQD34.

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-2592-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_01894. Smc_prok.
InterProiIPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
IPR024704. SMC.
IPR010935. SMC_hinge.
IPR011890. SMC_prok.
[Graphical view]
PfamiPF06470. SMC_hinge. 1 hit.
PF02463. SMC_N. 1 hit.
[Graphical view]
PIRSFiPIRSF005719. SMC. 1 hit.
SMARTiSM00968. SMC_hinge. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF75553. SSF75553. 1 hit.
TIGRFAMsiTIGR02168. SMC_prok_B. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Woods D.E., Nierman W.C.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1710b.

Entry informationi

Entry nameiSMC_BURP1
AccessioniPrimary (citable) accession number: Q3JR19
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: May 31, 2011
Last modified: December 9, 2015
This is version 75 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.