Peptidyl-prolyl cis-trans isomerase - Burkholderia pseudomallei (strain 1710b)

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Q3JK38 (Q3JK38_BURP1) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 56. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Peptidyl-prolyl cis-trans isomerase RuleBase RU004231
EC=5.2.1.8 RuleBase RU003915

Gene names

Ordered Locus Names:

BURPS1710b_A0907

Organism

Burkholderia pseudomallei (strain 1710b) [Complete proteome] [HAMAP] EMBL ABA51599.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group ›

Protein attributes

Sequence length	113 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Catalytic activity	Peptidylproline (omega=180) = peptidylproline (omega=0).
Sequence similarities	Contains 1 PPIase FKBP-type domain. RuleBase RU004231

Ontologies

Keywords
Molecular function	Isomerase Rotamase RuleBase RU003715
Technical term	3D-structure PDB 3UF8 PDB 3UQB PDB 4GIV PDB 2L2S PDB 4DZ2 PDB 3VAW PDB 4DZ3 PDB 4FN2 PDB 4G50 PDB 4GGQ Complete proteome
Gene Ontology (GO)
Biological_process	protein folding Inferred from electronic annotation. Source: UniProtKB-KW protein peptidyl-prolyl isomerization Inferred from electronic annotation. Source: GOC
Molecular_function	peptidyl-prolyl cis-trans isomerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q3JK38 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 10AB26FB56F3F284
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113

11,930

        10         20         30         40         50         60 
MTVVTTESGL KYEDLTEGSG AEARAGQTVS VHYTGWLTDG QKFDSSKDRN DPFAFVLGGG 

        70         80         90        100        110 
MVIKGWDEGV QGMKVGGVRR LTIPPQLGYG ARGAGGVIPP NATLVFEVEL LDV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Woods D.E., Nierman W.C. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1710b EMBL ABA51599.1.
[2]	"Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Zheng S., Barnwal R., Leeper T., Varani G. Submitted (AUG-2010) to the PDB data bank Cited for: STRUCTURE BY NMR.
[3]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with a G95A surface mutation from Burkholderia pseudomallei complexed with FK506." Seattle Structural Genomics Center for Infectious Disease (SSGCID) SSGCID, Fox III D., Abendroth J., Staker B., Stewart L. Submitted (OCT-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 2-113.
[4]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with FK506." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Abendroth J., Staker B., Stewart L. Submitted (NOV-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 2-113.
[5]	"Crystal structure of a smt fusion peptidyl-prolyl cis-trans isomerase with surface mutation v3i from burkholderia pseudomallei complexed with fk506." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Craig T.K., Staker B., Stewart L. Submitted (DEC-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) OF 4-113.
[6]	"Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation M61H from Burkholderia pseudomallei complexed with FK506." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Abendroth J., Muruthi M.M., Staker B., Stewart L. Submitted (FEB-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 2-113.
[7]	"Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation R92G from Burkholderia pseudomallei complexed with FK506." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Abendroth J., Staker B., Stewart L. Submitted (FEB-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 2-113.
[8]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ37." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Abendroth J., Muruthi M.M., Sankaran B., Staker B., Stewart L. Submitted (JUN-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS) OF 2-113.
[9]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ168." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Fox III D., Abendroth J., Muruthi M.M., Sankaran B., Staker B., Stewart L. Submitted (JUL-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS) OF 2-113.
[10]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with CJ40." SSGCID, Fox III D., Abendroth J., Muruthi M.M., Staker B., Stewart L. Submitted (AUG-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS) OF 2-113.
[11]	"Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183." Seattle Structural Genomics Center for Infectious Disease (SSGCID) Submitted (AUG-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) OF 2-113.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000125 Genomic DNA. Translation: ABA51599.1.

RefSeq

YP_336065.1. NC_007435.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2L2S	NMR	-	A	1-113	[»]
3UF8	X-ray	1.50	A	2-113	[»]
3UQB	X-ray	1.90	A	2-113	[»]
3VAW	X-ray	1.55	A	4-113	[»]
4DZ2	X-ray	2.00	A/B	2-113	[»]
4DZ3	X-ray	2.00	A/B	2-113	[»]
4FN2	X-ray	1.95	A/B	2-113	[»]
4G50	X-ray	1.75	A/B	2-113	[»]
4GGQ	X-ray	1.95	A/B/C/D	2-113	[»]
4GIV	X-ray	2.45	A/B	2-113	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

320372.BURPS1710b_A0907.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABA51599; ABA51599; BURPS1710b_A0907.

GeneID

KEGG

bpm:BURPS1710b_A0907.

PATRIC

19242233. VBIBurPse115837_4954.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Family and domain databases

InterPro

IPR023566. PPIase_FKBP.
IPR001179. PPIase_FKBP_dom.
[Graphical view]

PANTHER

PTHR10516. PTHR10516. 1 hit.

Pfam

PF00254. FKBP_C. 1 hit.
[Graphical view]

PROSITE

PS50059. FKBP_PPIASE. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

Q3JK38_BURP1

Accession

Primary (citable) accession number: Q3JK38

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info