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Q3JK38 (Q3JK38_BURP1) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptidyl-prolyl cis-trans isomerase RuleBase RU003915

EC=5.2.1.8 RuleBase RU003915
Gene names
Ordered Locus Names:BURPS1710b_A0907 EMBL ABA51599.1
OrganismBurkholderia pseudomallei (strain 1710b) [Complete proteome] [HAMAP] EMBL ABA51599.1
Taxonomic identifier320372 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group

Protein attributes

Sequence length113 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Peptidylproline (omega=180) = peptidylproline (omega=0). RuleBase RU003915

Sequence similarities

Contains 1 PPIase FKBP-type domain. RuleBase RU004231

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding511Calcium PDB 4DZ2 PDB 4DZ3
Metal binding521Calcium; via carbonyl oxygen PDB 4DZ2 PDB 4DZ3
Metal binding1121Calcium PDB 4DZ2 PDB 4DZ3
Metal binding1131Calcium; via amide nitrogen and carbonyl oxygen PDB 4DZ2 PDB 4DZ3
Binding site51Acetate 1 PDB 4DZ3
Binding site111Acetate 1 PDB 4DZ3
Binding site341Acetate 2 PDB 4DZ3
Binding site341Acetate 3 PDB 4DZ3
Binding site381Acetate 4 PDB 4DZ3
Binding site881Acetate 5; via carbonyl oxygen PDB 4DZ3

Sequences

Sequence LengthMass (Da)Tools
Q3JK38 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 10AB26FB56F3F284

FASTA11311,930
        10         20         30         40         50         60 
MTVVTTESGL KYEDLTEGSG AEARAGQTVS VHYTGWLTDG QKFDSSKDRN DPFAFVLGGG 

        70         80         90        100        110 
MVIKGWDEGV QGMKVGGVRR LTIPPQLGYG ARGAGGVIPP NATLVFEVEL LDV 

« Hide

References

« Hide 'large scale' references
[1]Woods D.E., Nierman W.C.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1710b EMBL ABA51599.1.
[2]"Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine."
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Zheng S., Barnwal R., Leeper T., Varani G.
Submitted (AUG-2010) to the PDB data bank
Cited for: STRUCTURE BY NMR.
[3]"A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins."
Begley D.W., Fox D., Jenner D., Juli C., Pierce P.G., Abendroth J., Muruthi M., Safford K., Anderson V., Atkins K., Barnes S.R., Moen S.O., Raymond A.C., Stacy R., Myler P.J., Staker B.L., Harmer N.J., Norville I.H. expand/collapse author list , Holzgrabe U., Sarkar-Tyson M., Edwards T.E., Lorimer D.D.
Antimicrob. Agents Chemother. 58:1458-1467(2014) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 2-113 IN COMPLEX WITH ACETATE AND CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000125 Genomic DNA. Translation: ABA51599.1.
RefSeqYP_336065.1. NC_007435.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2L2SNMR-A1-113[»]
3UF8X-ray1.50A2-113[»]
3UQBX-ray1.90A2-113[»]
3VAWX-ray1.55A4-113[»]
4DZ2X-ray2.00A/B2-113[»]
4DZ3X-ray2.00A/B2-113[»]
4FN2X-ray1.95A/B2-113[»]
4G50X-ray1.75A/B2-113[»]
4GGQX-ray1.95A/B/C/D2-113[»]
4GIVX-ray2.45A/B2-113[»]
ProteinModelPortalQ3JK38.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING320372.BURPS1710b_A0907.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABA51599; ABA51599; BURPS1710b_A0907.
GeneID3694107.
KEGGbpm:BURPS1710b_A0907.
PATRIC19242233. VBIBurPse115837_4954.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0545.
HOGENOMHOG000154887.
KOK01802.
OMAQKGKKFD.
OrthoDBEOG6DRPKW.

Enzyme and pathway databases

BioCycBPSE320372:GBYB-4705-MONOMER.

Family and domain databases

InterProIPR023566. PPIase_FKBP.
IPR001179. PPIase_FKBP_dom.
[Graphical view]
PANTHERPTHR10516. PTHR10516. 1 hit.
PfamPF00254. FKBP_C. 1 hit.
[Graphical view]
PROSITEPS50059. FKBP_PPIASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ3JK38.

Entry information

Entry nameQ3JK38_BURP1
AccessionPrimary (citable) accession number: Q3JK38
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: June 11, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)