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Protein

Peptidyl-prolyl cis-trans isomerase

Gene

BURPS1710b_A0907

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

Peptidylproline (omega=180) = peptidylproline (omega=0).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi51 – 511CalciumCombined sources
Metal bindingi52 – 521Calcium; via carbonyl oxygenCombined sources
Metal bindingi112 – 1121CalciumCombined sources
Metal bindingi113 – 1131Calcium; via amide nitrogen and carbonyl oxygenCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase, RotamaseUniRule annotation

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-4705-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Peptidyl-prolyl cis-trans isomeraseUniRule annotation (EC:5.2.1.8UniRule annotation)
Gene namesi
Ordered Locus Names:BURPS1710b_A0907Imported
OrganismiBurkholderia pseudomallei (strain 1710b)Imported
Taxonomic identifieri320372 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
Proteomesi
  • UP000002700 Componenti: Chromosome II

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2L2SNMR-A1-113[»]
3UF8X-ray1.50A2-113[»]
3UQBX-ray1.90A2-113[»]
3VAWX-ray1.55A12-95[»]
A99-110[»]
4DZ2X-ray2.00A/B2-113[»]
4DZ3X-ray2.00A/B2-113[»]
4FN2X-ray1.95A/B2-113[»]
4G50X-ray1.75A/B2-113[»]
4GGQX-ray1.95A/B/C/D2-113[»]
4GIVX-ray2.45A/B2-113[»]
ProteinModelPortaliQ3JK38.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ3JK38.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 11388PPIase FKBP-typeInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 PPIase FKBP-type domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000154887.
KOiK03772.
OMAiQICVMHY.
OrthoDBiEOG6DRPKW.

Family and domain databases

InterProiIPR023566. PPIase_FKBP.
IPR001179. PPIase_FKBP_dom.
[Graphical view]
PANTHERiPTHR10516. PTHR10516. 1 hit.
PfamiPF00254. FKBP_C. 1 hit.
[Graphical view]
PROSITEiPS50059. FKBP_PPIASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3JK38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVVTTESGL KYEDLTEGSG AEARAGQTVS VHYTGWLTDG QKFDSSKDRN
60 70 80 90 100
DPFAFVLGGG MVIKGWDEGV QGMKVGGVRR LTIPPQLGYG ARGAGGVIPP
110
NATLVFEVEL LDV
Length:113
Mass (Da):11,930
Last modified:November 8, 2005 - v1
Checksum:i10AB26FB56F3F284
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA51599.1.
RefSeqiWP_004525093.1. NC_007435.1.

Genome annotation databases

EnsemblBacteriaiABA51599; ABA51599; BURPS1710b_A0907.
KEGGibpm:BURPS1710b_A0907.
PATRICi19242233. VBIBurPse115837_4954.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA51599.1.
RefSeqiWP_004525093.1. NC_007435.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2L2SNMR-A1-113[»]
3UF8X-ray1.50A2-113[»]
3UQBX-ray1.90A2-113[»]
3VAWX-ray1.55A12-95[»]
A99-110[»]
4DZ2X-ray2.00A/B2-113[»]
4DZ3X-ray2.00A/B2-113[»]
4FN2X-ray1.95A/B2-113[»]
4G50X-ray1.75A/B2-113[»]
4GGQX-ray1.95A/B/C/D2-113[»]
4GIVX-ray2.45A/B2-113[»]
ProteinModelPortaliQ3JK38.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA51599; ABA51599; BURPS1710b_A0907.
KEGGibpm:BURPS1710b_A0907.
PATRICi19242233. VBIBurPse115837_4954.

Phylogenomic databases

HOGENOMiHOG000154887.
KOiK03772.
OMAiQICVMHY.
OrthoDBiEOG6DRPKW.

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-4705-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ3JK38.

Family and domain databases

InterProiIPR023566. PPIase_FKBP.
IPR001179. PPIase_FKBP_dom.
[Graphical view]
PANTHERiPTHR10516. PTHR10516. 1 hit.
PfamiPF00254. FKBP_C. 1 hit.
[Graphical view]
PROSITEiPS50059. FKBP_PPIASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Zhang L., Ge S.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1710bImported.
  2. "Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine."
    Seattle Structural Genomics Center for Infectious Disease (SSGCID)
    Zheng S., Barnwal R., Leeper T., Varani G.
    Submitted (AUG-2010) to the PDB data bank
    Cited for: STRUCTURE BY NMR.
  3. Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 4-113 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ3JK38_BURP1
AccessioniPrimary (citable) accession number: Q3JK38
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: April 13, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.