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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-5018-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:BURPS1710b_A1220
OrganismiBurkholderia pseudomallei (strain 1710b)
Taxonomic identifieri320372 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
Proteomesi
  • UP000002700 Componenti: Chromosome II

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 445445Probable D-serine dehydratasePRO_0000291720Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei111 – 1111N6-(pyridoxal phosphate)lysineUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ3JJ76.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3JJ76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVGRSLSLD PNLLAQLQSH SPTLWLNPHQ GMPLPDFAPT AADLADADAR
60 70 80 90 100
LRRCAGLLAE LFAELRPSGG LIASPLQPAE PLKRAARAGH AQAGAWYVKR
110 120 130 140 150
DDALPVAGSI KARGGFHEVL ALAESIAERH GLAGADTDRR ALASGAARAR
160 170 180 190 200
FARHTVMVGS TGNLGLSIGM LASALGFRTV AHMSADAKAW KKARLRTRGV
210 220 230 240 250
EVVEHAGDYA KAVDAGRRQA AGMPCCHFVD DEGSRMLFLG YATAAAELAA
260 270 280 290 300
QLAQAGRPVD ARHPLFVHLP CGVGGAPGGI VYGLKALYGE HVHAFVAEPT
310 320 330 340 350
ASPCVLVQLA GDAAHPRSVY DIGLDNRTEA DGLAVAQASP LAAALLRAQA
360 370 380 390 400
AGAFTVDDRQ LFAHLLDARE RLGIDLEPSA AAAFGGPAWI AGSDAGRAYL
410 420 430 440
RGRGIDPDAA THVIWATGGS LVPAQEHRRF QAHARAQRQV GGAGA
Length:445
Mass (Da):46,292
Last modified:November 8, 2005 - v1
Checksum:iF4E22B08A8B6EAD6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA52188.1.
RefSeqiWP_004529338.1. NC_007435.1.

Genome annotation databases

EnsemblBacteriaiABA52188; ABA52188; BURPS1710b_A1220.
KEGGibpm:BURPS1710b_A1220.
PATRICi19242945. VBIBurPse115837_5309.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA52188.1.
RefSeqiWP_004529338.1. NC_007435.1.

3D structure databases

ProteinModelPortaliQ3JJ76.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA52188; ABA52188; BURPS1710b_A1220.
KEGGibpm:BURPS1710b_A1220.
PATRICi19242945. VBIBurPse115837_5309.

Phylogenomic databases

HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-5018-MONOMER.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_BURP1
AccessioniPrimary (citable) accession number: Q3JJ76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: November 8, 2005
Last modified: September 7, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.