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Q3JIW1

- Q3JIW1_BURP1

UniProt

Q3JIW1 - Q3JIW1_BURP1

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
BURPS1710b_A1335
Organism
Burkholderia pseudomallei (strain 1710b)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-5133-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BURPS1710b_A1335Imported
OrganismiBurkholderia pseudomallei (strain 1710b)Imported
Taxonomic identifieri320372 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
ProteomesiUP000002700: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi320372.BURPS1710b_A1335.

Structurei

3D structure databases

ProteinModelPortaliQ3JIW1.
SMRiQ3JIW1. Positions 689-977.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3JIW1-1 [UniParc]FASTAAdd to Basket

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MRGRGLRDSG GKHEQWLLIK ERDGDARDQA DYDVLRARPG SVLGGARSAR    50
ARRGRAAEPT ERDAAAPKRA RASVPKGRAE AKTSGRAPRT VSNGTAGAGK 100
GASKRASKRE GTNTGNGARS GKGSGKGAGE GVATSRRKRA AAPQSSDVDS 150
ADTDSPAARG LALPAGLAAR FGLSGAKRAA LPRTLRPQLA TLVDTPTPGK 200
DWLYEAKFDG YRVLIRIDRG AASRPIAVYT REGLDWSAKF AAQLDALARL 250
PVDRGWLDGE AVVLDRAGVP DFQALQNALG AGRSNDVTLF LFDVPFLNGF 300
DLRGVPLERR RALLAALVAA HASDVLRYSE SLAFEAADLL TGACDAGLEG 350
LIGKRRDGRY VEGRSRSWIK LKCRRRQEFV IGGYTEPAGR RSGFGALLLG 400
VYARAPGDEG ERRTRGAAET RDERRRASHA SRTSRTSRTS RTSRTSRAPD 450
AGAARAPQAR PLALRYVGRV GTGFGERTLR ALARTLREHE TGRMPFADVP 500
RERSGTPVHW VKPVLVAECE FAEWTGDGIV RQASFVGLRE DKPARTIVRE 550
QPQSMETEAM NEHADEHTDE HTDARAERRT GGRTRRKARD DGARDAPALA 600
RHPKRGDAGS SARKGARDGE AGKRAAAGSS PSSSPSSSTS TSPSISASGR 650
TRGGGRSASR DRAGDADEGA NEDANDHAPR ERAGAPKVAG VRVSHPGRVI 700
DPHTGTRKLD LVEYWEWIAP WLLPHLKGRP VSLVRAPADI GGELFFQKHA 750
DKLEIPNVAL HPGLDPGHEA LITIDDVKGL VGAAQMGTIE LHTWNAHVSN 800
IEKPDRAVFD LDPDPSLDWR AVIEAAQLTR ALLDELGLVS FCKTSGGKGL 850
HVVVPLARHA GWDDVKAFAH AVARHMAATL PERFTATMGP RNRKGKIFVD 900
YLRNNRGAST IAAYSVRARP GLGVSVPIAW DELPDTTGAA QWTLANLHER 950
LDALKHDPWR AYAHVRQRVT AALRKRLSDG 980
Length:980
Mass (Da):105,516
Last modified:November 8, 2005 - v1
Checksum:i0C63CB5DB13BC7A0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000125 Genomic DNA. Translation: ABA51818.1.
RefSeqiWP_004529424.1. NC_007435.1.
YP_336492.1. NC_007435.1.

Genome annotation databases

EnsemblBacteriaiABA51818; ABA51818; BURPS1710b_A1335.
GeneIDi3694285.
KEGGibpm:BURPS1710b_A1335.
PATRICi19243195. VBIBurPse115837_5434.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000125 Genomic DNA. Translation: ABA51818.1 .
RefSeqi WP_004529424.1. NC_007435.1.
YP_336492.1. NC_007435.1.

3D structure databases

ProteinModelPortali Q3JIW1.
SMRi Q3JIW1. Positions 689-977.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 320372.BURPS1710b_A1335.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA51818 ; ABA51818 ; BURPS1710b_A1335 .
GeneIDi 3694285.
KEGGi bpm:BURPS1710b_A1335.
PATRICi 19243195. VBIBurPse115837_5434.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPSE320372:GBYB-5133-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 2 hits.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Woods D.E., Nierman W.C.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1710bImported.

Entry informationi

Entry nameiQ3JIW1_BURP1
AccessioniPrimary (citable) accession number: Q3JIW1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: September 3, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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