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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

BURPS1710b_A1335

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-5133-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BURPS1710b_A1335Imported
OrganismiBurkholderia pseudomallei (strain 1710b)Imported
Taxonomic identifieri320372 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
ProteomesiUP000002700 Componenti: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi320372.BURPS1710b_A1335.

Structurei

3D structure databases

ProteinModelPortaliQ3JIW1.
SMRiQ3JIW1. Positions 689-977.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3JIW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGRGLRDSG GKHEQWLLIK ERDGDARDQA DYDVLRARPG SVLGGARSAR
60 70 80 90 100
ARRGRAAEPT ERDAAAPKRA RASVPKGRAE AKTSGRAPRT VSNGTAGAGK
110 120 130 140 150
GASKRASKRE GTNTGNGARS GKGSGKGAGE GVATSRRKRA AAPQSSDVDS
160 170 180 190 200
ADTDSPAARG LALPAGLAAR FGLSGAKRAA LPRTLRPQLA TLVDTPTPGK
210 220 230 240 250
DWLYEAKFDG YRVLIRIDRG AASRPIAVYT REGLDWSAKF AAQLDALARL
260 270 280 290 300
PVDRGWLDGE AVVLDRAGVP DFQALQNALG AGRSNDVTLF LFDVPFLNGF
310 320 330 340 350
DLRGVPLERR RALLAALVAA HASDVLRYSE SLAFEAADLL TGACDAGLEG
360 370 380 390 400
LIGKRRDGRY VEGRSRSWIK LKCRRRQEFV IGGYTEPAGR RSGFGALLLG
410 420 430 440 450
VYARAPGDEG ERRTRGAAET RDERRRASHA SRTSRTSRTS RTSRTSRAPD
460 470 480 490 500
AGAARAPQAR PLALRYVGRV GTGFGERTLR ALARTLREHE TGRMPFADVP
510 520 530 540 550
RERSGTPVHW VKPVLVAECE FAEWTGDGIV RQASFVGLRE DKPARTIVRE
560 570 580 590 600
QPQSMETEAM NEHADEHTDE HTDARAERRT GGRTRRKARD DGARDAPALA
610 620 630 640 650
RHPKRGDAGS SARKGARDGE AGKRAAAGSS PSSSPSSSTS TSPSISASGR
660 670 680 690 700
TRGGGRSASR DRAGDADEGA NEDANDHAPR ERAGAPKVAG VRVSHPGRVI
710 720 730 740 750
DPHTGTRKLD LVEYWEWIAP WLLPHLKGRP VSLVRAPADI GGELFFQKHA
760 770 780 790 800
DKLEIPNVAL HPGLDPGHEA LITIDDVKGL VGAAQMGTIE LHTWNAHVSN
810 820 830 840 850
IEKPDRAVFD LDPDPSLDWR AVIEAAQLTR ALLDELGLVS FCKTSGGKGL
860 870 880 890 900
HVVVPLARHA GWDDVKAFAH AVARHMAATL PERFTATMGP RNRKGKIFVD
910 920 930 940 950
YLRNNRGAST IAAYSVRARP GLGVSVPIAW DELPDTTGAA QWTLANLHER
960 970 980
LDALKHDPWR AYAHVRQRVT AALRKRLSDG
Length:980
Mass (Da):105,516
Last modified:November 8, 2005 - v1
Checksum:i0C63CB5DB13BC7A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA51818.1.
RefSeqiYP_336492.1. NC_007435.1.

Genome annotation databases

EnsemblBacteriaiABA51818; ABA51818; BURPS1710b_A1335.
KEGGibpm:BURPS1710b_A1335.
PATRICi19243195. VBIBurPse115837_5434.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000125 Genomic DNA. Translation: ABA51818.1.
RefSeqiYP_336492.1. NC_007435.1.

3D structure databases

ProteinModelPortaliQ3JIW1.
SMRiQ3JIW1. Positions 689-977.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi320372.BURPS1710b_A1335.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA51818; ABA51818; BURPS1710b_A1335.
KEGGibpm:BURPS1710b_A1335.
PATRICi19243195. VBIBurPse115837_5434.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBPSE320372:GBYB-5133-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Woods D.E., Nierman W.C.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1710bImported.

Entry informationi

Entry nameiQ3JIW1_BURP1
AccessioniPrimary (citable) accession number: Q3JIW1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: April 1, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.