Q3JIW1 (Q3JIW1_BURP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ABA51818.1
EC=6.5.1.1 EMBL ABA51818.1

Gene names

Ordered Locus Names:

BURPS1710b_A1335

Organism

Burkholderia pseudomallei (strain 1710b) [Complete proteome] [HAMAP] EMBL ABA51818.1

Taxonomic identifier

320372 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group › Burkholderia pseudomallei

Protein attributes

Sequence length	980 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABA51818.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3JIW1 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 0C63CB5DB13BC7A0	FASTA	980	105,516
	10 20 30 40 50 60 MRGRGLRDSG GKHEQWLLIK ERDGDARDQA DYDVLRARPG SVLGGARSAR ARRGRAAEPT 70 80 90 100 110 120 ERDAAAPKRA RASVPKGRAE AKTSGRAPRT VSNGTAGAGK GASKRASKRE GTNTGNGARS 130 140 150 160 170 180 GKGSGKGAGE GVATSRRKRA AAPQSSDVDS ADTDSPAARG LALPAGLAAR FGLSGAKRAA 190 200 210 220 230 240 LPRTLRPQLA TLVDTPTPGK DWLYEAKFDG YRVLIRIDRG AASRPIAVYT REGLDWSAKF 250 260 270 280 290 300 AAQLDALARL PVDRGWLDGE AVVLDRAGVP DFQALQNALG AGRSNDVTLF LFDVPFLNGF 310 320 330 340 350 360 DLRGVPLERR RALLAALVAA HASDVLRYSE SLAFEAADLL TGACDAGLEG LIGKRRDGRY 370 380 390 400 410 420 VEGRSRSWIK LKCRRRQEFV IGGYTEPAGR RSGFGALLLG VYARAPGDEG ERRTRGAAET 430 440 450 460 470 480 RDERRRASHA SRTSRTSRTS RTSRTSRAPD AGAARAPQAR PLALRYVGRV GTGFGERTLR 490 500 510 520 530 540 ALARTLREHE TGRMPFADVP RERSGTPVHW VKPVLVAECE FAEWTGDGIV RQASFVGLRE 550 560 570 580 590 600 DKPARTIVRE QPQSMETEAM NEHADEHTDE HTDARAERRT GGRTRRKARD DGARDAPALA 610 620 630 640 650 660 RHPKRGDAGS SARKGARDGE AGKRAAAGSS PSSSPSSSTS TSPSISASGR TRGGGRSASR 670 680 690 700 710 720 DRAGDADEGA NEDANDHAPR ERAGAPKVAG VRVSHPGRVI DPHTGTRKLD LVEYWEWIAP 730 740 750 760 770 780 WLLPHLKGRP VSLVRAPADI GGELFFQKHA DKLEIPNVAL HPGLDPGHEA LITIDDVKGL 790 800 810 820 830 840 VGAAQMGTIE LHTWNAHVSN IEKPDRAVFD LDPDPSLDWR AVIEAAQLTR ALLDELGLVS 850 860 870 880 890 900 FCKTSGGKGL HVVVPLARHA GWDDVKAFAH AVARHMAATL PERFTATMGP RNRKGKIFVD 910 920 930 940 950 960 YLRNNRGAST IAAYSVRARP GLGVSVPIAW DELPDTTGAA QWTLANLHER LDALKHDPWR 970 980 AYAHVRQRVT AALRKRLSDG

References

[1]	Woods D.E., Nierman W.C. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 1710b EMBL ABA51818.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000125 Genomic DNA. Translation: ABA51818.1.
RefSeq	YP_336492.1. NC_007435.1.
3D structure databases
ProteinModelPortal	Q3JIW1.
SMR	Q3JIW1. Positions 689-977.
ModBase	Search...
Protein-protein interaction databases
STRING	320372.BURPS1710b_A1335.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABA51818; ABA51818; BURPS1710b_A1335.
GeneID	3694285.
KEGG	bpm:BURPS1710b_A1335.
PATRIC	19243195. VBIBurPse115837_5434.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	CLSK711266.
Family and domain databases
Gene3D	2.40.50.140. 2 hits.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3JIW1_BURP1

Accession

Primary (citable) accession number: Q3JIW1

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)