Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q3JIW1

- Q3JIW1_BURP1

UniProt

Q3JIW1 - Q3JIW1_BURP1

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

BURPS1710b_A1335

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (08 Nov 2005)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBPSE320372:GBYB-5133-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:BURPS1710b_A1335Imported
    OrganismiBurkholderia pseudomallei (strain 1710b)Imported
    Taxonomic identifieri320372 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
    ProteomesiUP000002700: Chromosome II

    Interactioni

    Protein-protein interaction databases

    STRINGi320372.BURPS1710b_A1335.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3JIW1.
    SMRiQ3JIW1. Positions 689-977.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 2 hits.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3JIW1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRGRGLRDSG GKHEQWLLIK ERDGDARDQA DYDVLRARPG SVLGGARSAR    50
    ARRGRAAEPT ERDAAAPKRA RASVPKGRAE AKTSGRAPRT VSNGTAGAGK 100
    GASKRASKRE GTNTGNGARS GKGSGKGAGE GVATSRRKRA AAPQSSDVDS 150
    ADTDSPAARG LALPAGLAAR FGLSGAKRAA LPRTLRPQLA TLVDTPTPGK 200
    DWLYEAKFDG YRVLIRIDRG AASRPIAVYT REGLDWSAKF AAQLDALARL 250
    PVDRGWLDGE AVVLDRAGVP DFQALQNALG AGRSNDVTLF LFDVPFLNGF 300
    DLRGVPLERR RALLAALVAA HASDVLRYSE SLAFEAADLL TGACDAGLEG 350
    LIGKRRDGRY VEGRSRSWIK LKCRRRQEFV IGGYTEPAGR RSGFGALLLG 400
    VYARAPGDEG ERRTRGAAET RDERRRASHA SRTSRTSRTS RTSRTSRAPD 450
    AGAARAPQAR PLALRYVGRV GTGFGERTLR ALARTLREHE TGRMPFADVP 500
    RERSGTPVHW VKPVLVAECE FAEWTGDGIV RQASFVGLRE DKPARTIVRE 550
    QPQSMETEAM NEHADEHTDE HTDARAERRT GGRTRRKARD DGARDAPALA 600
    RHPKRGDAGS SARKGARDGE AGKRAAAGSS PSSSPSSSTS TSPSISASGR 650
    TRGGGRSASR DRAGDADEGA NEDANDHAPR ERAGAPKVAG VRVSHPGRVI 700
    DPHTGTRKLD LVEYWEWIAP WLLPHLKGRP VSLVRAPADI GGELFFQKHA 750
    DKLEIPNVAL HPGLDPGHEA LITIDDVKGL VGAAQMGTIE LHTWNAHVSN 800
    IEKPDRAVFD LDPDPSLDWR AVIEAAQLTR ALLDELGLVS FCKTSGGKGL 850
    HVVVPLARHA GWDDVKAFAH AVARHMAATL PERFTATMGP RNRKGKIFVD 900
    YLRNNRGAST IAAYSVRARP GLGVSVPIAW DELPDTTGAA QWTLANLHER 950
    LDALKHDPWR AYAHVRQRVT AALRKRLSDG 980
    Length:980
    Mass (Da):105,516
    Last modified:November 8, 2005 - v1
    Checksum:i0C63CB5DB13BC7A0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000125 Genomic DNA. Translation: ABA51818.1.
    RefSeqiWP_004529424.1. NC_007435.1.
    YP_336492.1. NC_007435.1.

    Genome annotation databases

    EnsemblBacteriaiABA51818; ABA51818; BURPS1710b_A1335.
    GeneIDi3694285.
    KEGGibpm:BURPS1710b_A1335.
    PATRICi19243195. VBIBurPse115837_5434.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000125 Genomic DNA. Translation: ABA51818.1 .
    RefSeqi WP_004529424.1. NC_007435.1.
    YP_336492.1. NC_007435.1.

    3D structure databases

    ProteinModelPortali Q3JIW1.
    SMRi Q3JIW1. Positions 689-977.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 320372.BURPS1710b_A1335.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA51818 ; ABA51818 ; BURPS1710b_A1335 .
    GeneIDi 3694285.
    KEGGi bpm:BURPS1710b_A1335.
    PATRICi 19243195. VBIBurPse115837_5434.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BPSE320372:GBYB-5133-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 2 hits.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Woods D.E., Nierman W.C.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 1710bImported.

    Entry informationi

    Entry nameiQ3JIW1_BURP1
    AccessioniPrimary (citable) accession number: Q3JIW1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 8, 2005
    Last sequence update: November 8, 2005
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3