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Q3JCZ0 (Q3JCZ0_NITOC) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Peptide chain release factor 2 HAMAP-Rule MF_00094

Short name=RF-2 HAMAP-Rule MF_00094
Gene names
Name:prfB HAMAP-Rule MF_00094
Ordered Locus Names:Noc_0793 EMBL ABA57306.1
OrganismNitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) [Complete proteome] [HAMAP] EMBL ABA57306.1
Taxonomic identifier323261 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus

Protein attributes

Sequence length331 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA By similarity. HAMAP-Rule MF_00094 SAAS SAAS004374

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00094 SAAS SAAS004374.

Post-translational modification

Methylated by PrmC. Methylation increases the termination efficiency of RF2 By similarity. HAMAP-Rule MF_00094

Sequence similarities

Belongs to the prokaryotic/mitochondrial release factor family. HAMAP-Rule MF_00094

Ontologies

Keywords
   Biological processProtein biosynthesis HAMAP-Rule MF_00094 SAAS SAAS004374
   Cellular componentCytoplasm HAMAP-Rule MF_00094 SAAS SAAS004374
   PTMMethylation HAMAP-Rule MF_00094
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontranslation release factor activity, codon specific

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue2181N5-methylglutamine By similarity HAMAP-Rule MF_00094

Sequences

Sequence LengthMass (Da)Tools
Q3JCZ0 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 205FC5F0C158A58D

FASTA33137,196
        10         20         30         40         50         60 
MEVDRELAVP SVWDEPERAQ QLGQERAQLQ SVVAPLAELG GEIIQVRELF ELAMEEGDED 

        70         80         90        100        110        120 
TAQEIIAELD VVEQRLAKLE FQRMFAGEMD PNNAYLDIQA GSGGTEAQDW ANMLLRMYLR 

       130        140        150        160        170        180 
WGEKHSFKTE LTEVSEGEVA GIKSAAIRFE GEYAFGWLRT ETGVHRLVRK SPFDSGNRRH 

       190        200        210        220        230        240 
TSFASVFVYP EVDERIDIEI NPADLRIDTY RASGAGGQHV NRTDSAVRIT HLPSSLVVQC 

       250        260        270        280        290        300 
QSERSQHQNK AHAMAQLRAK LYELEMRNRQ AEKQAAEEAK ADIGWGSQIR NYVLDQSRIK 

       310        320        330 
DLRTGIEVGN TQGVLDGDLD SFIEASLKSG F 

« Hide

References

[1]"Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707."
Klotz M.G., Arp D.J., Chain P.S.G., El-Sheikh A.F., Hauser L.J., Hommes N.G., Larimer F.W., Malfatti S.A., Norton J.M., Poret-Peterson A.T., Vergez L.M., Ward B.B.
Appl. Environ. Microbiol. 72:6299-6315(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19707 / NCIMB 11848.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000127 Genomic DNA. Translation: ABA57306.1.
RefSeqYP_342836.1. NC_007484.1.

3D structure databases

ProteinModelPortalQ3JCZ0.
SMRQ3JCZ0. Positions 2-331.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323261.Noc_0793.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABA57306; ABA57306; Noc_0793.
GeneID3707059.
KEGGnoc:Noc_0793.
PATRIC22705436. VBINitOce57959_0959.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1186.
HOGENOMHOG000074814.
KOK02836.
OMAQTDHIEI.
OrthoDBEOG6TN48J.
ProtClustDBCLSK2770926.

Enzyme and pathway databases

BioCycNOCE323261:GCI3-800-MONOMER.

Family and domain databases

Gene3D3.30.160.20. 1 hit.
HAMAPMF_00094. Rel_fac_2.
InterProIPR014720. dsRNA-bd_dom.
IPR005139. PCRF.
IPR000352. Pep_chain_release_fac_I_II.
IPR020853. Peptide_chain_release_fac2_bac.
IPR004374. PrfB.
[Graphical view]
PANTHERPTHR11075:SF6. PTHR11075:SF6. 1 hit.
PfamPF03462. PCRF. 1 hit.
PF00472. RF-1. 1 hit.
[Graphical view]
SMARTSM00937. PCRF. 1 hit.
[Graphical view]
TIGRFAMsTIGR00020. prfB. 1 hit.
PROSITEPS00745. RF_PROK_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3JCZ0_NITOC
AccessionPrimary (citable) accession number: Q3JCZ0
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: February 19, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)