Q3JCX7 (GLND_NITOC) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
[Protein-PII] uridylyltransferase
Short name=PII uridylyl-transferase
EC=2.7.7.59

Alternative name(s):
UTase
Uridylyl-removing enzyme

Gene names

Name:	glnD
Ordered Locus Names:	Noc_0806

Organism

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) [Complete proteome] [HAMAP]

Taxonomic identifier

323261 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Chromatiaceae › Nitrosococcus › Nitrosococcus oceani

Protein attributes

Sequence length	892 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein By similarity. HAMAP-Rule MF_00277
Catalytic activity	UTP + [protein-PII] = diphosphate + uridylyl-[protein-PII]. HAMAP-Rule MF_00277
Sequence similarities	Belongs to the GlnD family.

Ontologies

Keywords
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	nitrogen compound metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	[protein-PII] uridylyltransferase activity Inferred from electronic annotation. Source: HAMAP metal ion binding Inferred from electronic annotation. Source: InterPro phosphoric diester hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 892	892	[Protein-PII] uridylyltransferase HAMAP-Rule MF_00277		PRO_0000231683

Sequences

	Sequence		Length	Mass (Da)
	Q3JCX7 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 01DF936D6F5B286B	FASTA	892	103,332
	10 20 30 40 50 60 MPNFTGNTRP DPTLFEPAAF AKWIDTSEAP LLLLRSFLKE GIENLKQRFL TGTSAAELLP 70 80 90 100 110 120 LHAWLVDQIL VQACRLHTKK CPERVALVAV GGYGRGTLHP YSDIDILLLL TEETDSILQN 130 140 150 160 170 180 SIGHFISFLW DTGLEMGHSV RTVAECQQAA RDDLSFITSL MEARLLFGPE LLFKNLQTAI 190 200 210 220 230 240 APEQIWNSRQ FFLAKQAEQI TRHHKYHDTA YNLEPNLKEG PGGLRDIQMI QWVSKRYFNT 250 260 270 280 290 300 WSFDSLLQHD FLTVSERKEL LESQSFLWQL RYGLHTLTGR REDRLLFDHQ IALAKQLGYH 310 320 330 340 350 360 DQGPHLAVEQ LMKDYYRTAE NTGRLNEMLL QLLEERILLV DAKVHVRPIN ERFQARNGFL 370 380 390 400 410 420 EVINPSVFKH TPSALLEVFL LLQQHPEIKG VRASTIRLIR EHRHLIDDNF RADSFNRALF 430 440 450 460 470 480 MEIMRQSRGI TRELRRMNKY GILGAYLPVF GKIVGQMQYD MFHAYTVDEH TLFLIHNLRR 490 500 510 520 530 540 FALPKYAQEL PLCSEIFQRI SKPELLYLAG LFHDIAKGRG GDHSKLGAKD ALRFCLYHGL 550 560 570 580 590 600 SRDDSRLVAW LVAHHLLMSM TAQRRDINDP KVIQRFAREV GDERRLNHLY LLTAADIRAT 610 620 630 640 650 660 NPNLWNSWKD ALLNKLYTAT QQALRQGLEY PVDKKEHIRD IQNEARQALL KDGWTEQKLD 670 680 690 700 710 720 ILWSQIDADY FLRHTPNEIR WHIKALAQKE PHDGAPRILV RIHNQEPGTM EVFIYARAHA 730 740 750 760 770 780 LIFTVTTRTM AQLDLDVLDA RIITTGHGFV LESFVVREAA TIRAEADLEF RLQEIQEVLT 790 800 810 820 830 840 QRLTQPDRAP PYRPGFIPRK LKLFKFPTTI TFTKDRRNQC TVMELTTNNW PGLLSRVCRA 850 860 870 880 890 LASCQVRLVN AKITTLGTQV VDVFFICNQQ DKPLTPEQQQ QLKEAIYTYL ER

References

[1]

"Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707." Klotz M.G., Arp D.J., Chain P.S.G., El-Sheikh A.F., Hauser L.J., Hommes N.G., Larimer F.W., Malfatti S.A., Norton J.M., Poret-Peterson A.T., Vergez L.M., Ward B.B. Appl. Environ. Microbiol. 72:6299-6315(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 19707 / NCIMB 11848.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000127 Genomic DNA. Translation: ABA57319.1.
RefSeq	YP_342849.1. NC_007484.1.
3D structure databases
ProteinModelPortal	Q3JCX7.
ModBase	Search...
Protein-protein interaction databases
STRING	323261.Noc_0806.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABA57319; ABA57319; Noc_0806.
GeneID	3707072.
KEGG	noc:Noc_0806.
PATRIC	22705462. VBINitOce57959_0972.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2844.
HOGENOM	HOG000261778.
KO	K00990.
OMA	SPKVWNA.
ProtClustDB	CLSK2770936.
Family and domain databases
Gene3D	1.10.3210.10. 1 hit.
HAMAP	MF_00277. PII_uridylyl-transf.
InterPro	IPR010043. GlnD_Uridyltrans. IPR003607. HD/PDEase_dom. IPR006674. HD_domain. IPR002934. Nucleotidyltransferase. IPR013546. PII_UdlTrfase/GS_AdlTrfase. [Graphical view]
PANTHER	PTHR13734:SF1. PTHR13734:SF1. 1 hit.
Pfam	PF08335. GlnD_UR_UTase. 1 hit. PF01966. HD. 1 hit. PF01909. NTP_transf_2. 1 hit. [Graphical view]
PIRSF	PIRSF006288. PII_uridyltransf. 1 hit.
SMART	SM00471. HDc. 1 hit. [Graphical view]
TIGRFAMs	TIGR01693. UTase_glnD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLND_NITOC

Accession

Primary (citable) accession number: Q3JCX7

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program