Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q3JCN0

- GLGB_NITOC

UniProt

Q3JCN0 - GLGB_NITOC

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei415 – 4151NucleophileUniRule annotation
Active sitei468 – 4681Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciNOCE323261:GCI3-913-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Noc_0904
OrganismiNitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Taxonomic identifieri323261 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
ProteomesiUP000006838: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7497491,4-alpha-glucan branching enzyme GlgBPRO_0000260671Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi323261.Noc_0904.

Structurei

3D structure databases

ProteinModelPortaliQ3JCN0.
SMRiQ3JCN0. Positions 124-733.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3JCN0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTNSQYSPQP MAAEFSEAME KLVNACYSDP FRVLGPHPYQ KGIVVRAYLP
60 70 80 90 100
HAIQAWIGTE PPQEMARSSA INLFEWHGKA KALPLPYQVL WEDKMGFTHY
110 120 130 140 150
EYDPYCFPPQ LSDYDLHLFG EGKHWHVYRI LGSHPVIVDG TSGVLFATWA
160 170 180 190 200
PEAERVSIVG DFNRWDGRCH PMQLRGLTGV WELFIPGLKP GTLYKYELRN
210 220 230 240 250
RNRGSIHLKS DPYGQRFEQR PHTASIVAAK TNYLWQDRKW MEQRKQFDWL
260 270 280 290 300
HQPISVYEVH LGSWQRGENG AFLNYRQLAR QLVDYVLKTG FTHIELLPVT
310 320 330 340 350
EHPLDASWGY QTTGYFAPTS RFGSPDEFRY FVDHCHLHGI GVLMDWVPGH
360 370 380 390 400
FPKDAHGLAQ FDGSALYEHE DPRLGEHRDW GTLIFNYGRH EVRNFLLSSA
410 420 430 440 450
LYWLEEFHID GLRVDAVASM LYLDYSRQEG DWIPNKYGGR ENLEAIDFLR
460 470 480 490 500
ELNKVLHAQH PGVLVIAEES TSWPMVSHPI YVGGLGFSMK WNMGWMNDTL
510 520 530 540 550
SYMSKDPIYR HYHHDALTFG LLYAFNENFM LPLSHDEVVH GKQSLLYKMP
560 570 580 590 600
GDEWQRFANL RLLYTMMFTY PGKKLLFMGC EFGQGEEWNE SRSLDWYLLN
610 620 630 640 650
YPVHQGVQAA IKDLNHLYRS LPALNYYDFA KEGFEWIDCH DSAQSVLSYL
660 670 680 690 700
RLKDGDFVIV VLNFTPVPRT NYRLGVPKSG VYLECFNSDS TYYGGSNMGN
710 720 730 740
SQTIQTDSIT WMGRPYSINI TVPPLAGIVL RLKTPASKMP ATAPLSPGK
Length:749
Mass (Da):86,392
Last modified:November 8, 2005 - v1
Checksum:iB16F7B8E7ABA23B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000127 Genomic DNA. Translation: ABA57416.1.
RefSeqiYP_342946.1. NC_007484.1.

Genome annotation databases

EnsemblBacteriaiABA57416; ABA57416; Noc_0904.
GeneIDi3707289.
KEGGinoc:Noc_0904.
PATRICi22705676. VBINitOce57959_1077.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000127 Genomic DNA. Translation: ABA57416.1 .
RefSeqi YP_342946.1. NC_007484.1.

3D structure databases

ProteinModelPortali Q3JCN0.
SMRi Q3JCN0. Positions 124-733.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 323261.Noc_0904.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA57416 ; ABA57416 ; Noc_0904 .
GeneIDi 3707289.
KEGGi noc:Noc_0904.
PATRICi 22705676. VBINitOce57959_1077.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci NOCE323261:GCI3-913-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707."
    Klotz M.G., Arp D.J., Chain P.S.G., El-Sheikh A.F., Hauser L.J., Hommes N.G., Larimer F.W., Malfatti S.A., Norton J.M., Poret-Peterson A.T., Vergez L.M., Ward B.B.
    Appl. Environ. Microbiol. 72:6299-6315(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19707 / NCIMB 11848.

Entry informationi

Entry nameiGLGB_NITOC
AccessioniPrimary (citable) accession number: Q3JCN0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 8, 2005
Last modified: November 26, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3