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Protein
Submitted name:

2,3-dimethylmalate lyase

Gene

Noc_1317

Organism
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciNOCE323261:GCI3-1337-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
2,3-dimethylmalate lyaseImported (EC:4.1.3.32Imported)
Gene namesi
Ordered Locus Names:Noc_1317Imported
OrganismiNitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)Imported
Taxonomic identifieri323261 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
ProteomesiUP000006838 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323261.Noc_1317.

Structurei

3D structure databases

ProteinModelPortaliQ3JBI1.
SMRiQ3JBI1. Positions 18-302.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2513.
HOGENOMiHOG000171929.
KOiK01841.
OMAiDFAWCSA.
OrthoDBiEOG6N947Q.

Family and domain databases

Gene3Di3.20.20.60. 1 hit.
3.90.550.10. 1 hit.
InterProiIPR025877. MobA-like_NTP_Trfase_dom.
IPR029044. Nucleotide-diphossugar_trans.
IPR012698. PEnolPyrv_PMutase_core.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF12804. NTP_transf_3. 1 hit.
[Graphical view]
SUPFAMiSSF51621. SSF51621. 1 hit.
SSF53448. SSF53448. 1 hit.
TIGRFAMsiTIGR02320. PEP_mutase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3JBI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTVPLPTAG TFKRRPSKFA QLRALLKSEP TEFLLEAHNG LSARIAEEAG
60 70 80 90 100
FKGVWASGLA ISSQFGVRDN NEASWTQIVD MLEFMSDTTT IPILLDGDTG
110 120 130 140 150
YGNFNNLRRL VRKLEQREIA GVCIEDKVFP KTNSFIGGER QPLAEVDEFC
160 170 180 190 200
GKIKAGKDSQ SDPDFSIVAR VEALIAGWGL DEALRRAEAY HRAGADAILI
210 220 230 240 250
HSKLSQADEI LAFAREWGNR APLIIVPTKY YSTPTEVFRK AGISTVIWAN
260 270 280 290 300
HLIRAAAAAM AQVAREIHDT QTLVNIEDQV APVSEIFRLQ GAEELLAAER
310 320 330 340 350
RYGASPEAET GAIVLGATRG KGLESLTQDR PKVMLPVAGI PLLRRLVDEF
360 370 380 390 400
KRQHVNRITV VTGYKPEAID VKAISLIHNP DYGHSSELSS LACALESLSE
410 420 430 440 450
DTIITYGDLL FRSYILNDLR HVPGNIVVVV DSALSPGMKD DIRDVAFCSQ
460 470 480 490 500
PDDRSLFRQD VDLLRIETQK KQLSKQPHGR WIGMARVAGE GRQWLLDALQ
510 520 530 540 550
ALRQQENFSQ LAMPDLFNHL VANGHPIKVL YINGHWLDVN DMEDLTRAGD

FAHGHQ
Length:556
Mass (Da):61,569
Last modified:November 8, 2005 - v1
Checksum:iC01B81CEB6874009
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000127 Genomic DNA. Translation: ABA57815.1.
RefSeqiWP_002810069.1. NC_007484.1.
YP_343345.1. NC_007484.1.

Genome annotation databases

EnsemblBacteriaiABA57815; ABA57815; Noc_1317.
KEGGinoc:Noc_1317.
PATRICi22706660. VBINitOce57959_1559.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000127 Genomic DNA. Translation: ABA57815.1.
RefSeqiWP_002810069.1. NC_007484.1.
YP_343345.1. NC_007484.1.

3D structure databases

ProteinModelPortaliQ3JBI1.
SMRiQ3JBI1. Positions 18-302.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323261.Noc_1317.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA57815; ABA57815; Noc_1317.
KEGGinoc:Noc_1317.
PATRICi22706660. VBINitOce57959_1559.

Phylogenomic databases

eggNOGiCOG2513.
HOGENOMiHOG000171929.
KOiK01841.
OMAiDFAWCSA.
OrthoDBiEOG6N947Q.

Enzyme and pathway databases

BioCyciNOCE323261:GCI3-1337-MONOMER.

Family and domain databases

Gene3Di3.20.20.60. 1 hit.
3.90.550.10. 1 hit.
InterProiIPR025877. MobA-like_NTP_Trfase_dom.
IPR029044. Nucleotide-diphossugar_trans.
IPR012698. PEnolPyrv_PMutase_core.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF12804. NTP_transf_3. 1 hit.
[Graphical view]
SUPFAMiSSF51621. SSF51621. 1 hit.
SSF53448. SSF53448. 1 hit.
TIGRFAMsiTIGR02320. PEP_mutase. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707."
    Klotz M.G., Arp D.J., Chain P.S.G., El-Sheikh A.F., Hauser L.J., Hommes N.G., Larimer F.W., Malfatti S.A., Norton J.M., Poret-Peterson A.T., Vergez L.M., Ward B.B.
    Appl. Environ. Microbiol. 72:6299-6315(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19707 / NCIMB 11848Imported.

Entry informationi

Entry nameiQ3JBI1_NITOC
AccessioniPrimary (citable) accession number: Q3JBI1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: May 27, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.