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Q3J5A7

- Q3J5A7_RHOS4

UniProt

Q3J5A7 - Q3J5A7_RHOS4

Protein
Submitted name:

Cytochrome c oxidase, aa3 type, subunit I

Gene

coxI

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (08 Nov 2005)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi54 – 541CalciumImported
    Metal bindingi57 – 571Calcium; via carbonyl oxygenImported
    Metal bindingi59 – 591Calcium; via carbonyl oxygenImported
    Metal bindingi61 – 611CalciumImported
    Metal bindingi102 – 1021Iron (heme 1 axial ligand); via tele nitrogenImported
    Metal bindingi284 – 2841Copper; via pros nitrogenImported
    Metal bindingi333 – 3331Copper; via tele nitrogenImported
    Metal bindingi334 – 3341Copper; via tele nitrogenImported
    Metal bindingi419 – 4191Iron (heme 2 axial ligand); via tele nitrogenImported
    Metal bindingi421 – 4211Iron (heme 1 axial ligand); via tele nitrogenImported

    GO - Molecular functioni

    1. copper ion binding Source: InterPro
    2. cytochrome-c oxidase activity Source: UniProtKB-EC
    3. heme binding Source: InterPro
    4. iron ion binding Source: InterPro

    GO - Biological processi

    1. aerobic respiration Source: InterPro
    2. electron transport chain Source: InterPro

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Keywords - Biological processi

    Electron transport, Respiratory chainUniRule annotation, Transport

    Keywords - Ligandi

    CalciumImported, CopperImported, HemeUniRule annotationImported, Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciRSPH272943:GJAS-472-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cytochrome c oxidase, aa3 type, subunit IImported (EC:1.9.3.1Imported)
    Gene namesi
    Name:coxIImported
    ORF Names:RSP_1877Imported
    OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
    Taxonomic identifieri272943 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
    ProteomesiUP000002703: Chromosome 1

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: InterPro
    3. respiratory chain Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    Interactioni

    Protein-protein interaction databases

    STRINGi272943.RSP_1877.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3OM3X-ray2.60A/C17-551[»]
    3OMAX-ray2.30A/C17-551[»]
    3OMIX-ray2.15A/C17-551[»]
    3OMNX-ray2.15A/C17-551[»]
    ProteinModelPortaliQ3J5A7.
    SMRiQ3J5A7. Positions 14-560.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ3J5A7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the heme-copper respiratory oxidase family.UniRule annotation

    Keywords - Domaini

    TransmembraneUniRule annotation

    Phylogenomic databases

    eggNOGiCOG0843.
    HOGENOMiHOG000085274.
    KOiK02274.
    OMAiMVYGYEG.
    OrthoDBiEOG6B35XR.
    PhylomeDBiQ3J5A7.

    Family and domain databases

    Gene3Di1.20.210.10. 1 hit.
    InterProiIPR000883. COX1.
    IPR023615. Cyt_c_Oxase_su1_BS.
    IPR023616. Cyt_c_Oxase_su1_dom.
    IPR014241. Cyt_c_oxidase_su1_bac.
    [Graphical view]
    PANTHERiPTHR10422. PTHR10422. 1 hit.
    PfamiPF00115. COX1. 1 hit.
    [Graphical view]
    PRINTSiPR01165. CYCOXIDASEI.
    SUPFAMiSSF81442. SSF81442. 1 hit.
    TIGRFAMsiTIGR02891. CtaD_CoxA. 1 hit.
    PROSITEiPS50855. COX1. 1 hit.
    PS00077. COX1_CUB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3J5A7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADAAIHGHE HDRRGFFTRW FMSTNHKDIG VLYLFTGGLV GLISVAFTVY    50
    MRMELMAPGV QFMCAEHLES GLVKGFFQSL WPSAVENCTP NGHLWNVMIT 100
    GHGILMMFFV VIPALFGGFG NYFMPLHIGA PDMAFPRMNN LSYWLYVAGT 150
    SLAVASLFAP GGNGQLGSGI GWVLYPPLST SESGYSTDLA IFAVHLSGAS 200
    SILGAINMIT TFLNMRAPGM TMHKVPLFAW SIFVTAWLIL LALPVLAGAI 250
    TMLLTDRNFG TTFFQPSGGG DPVLYQHILW FFGHPEVYII VLPAFGIVSH 300
    VIATFAKKPI FGYLPMVYAM VAIGVLGFVV WAHHMYTAGL SLTQQSYFMM 350
    ATMVIAVPTG IKIFSWIATM WGGSIELKTP MLWALGFLFL FTVGGVTGIV 400
    LSQASVDRYY HDTYYVVAHF HYVMSLGAVF GIFAGIYFWI GKMSGRQYPE 450
    WAGKLHFWMM FVGANLTFFP QHFLGRQGMP RRYIDYPEAF ATWNFVSSLG 500
    AFLSFASFLF FLGVIFYTLT RGARVTANNY WNEHADTLEW TLTSPPPEHT 550
    FEQLPKREDW ERAPAH 566
    Length:566
    Mass (Da):63,147
    Last modified:November 8, 2005 - v1
    Checksum:i65A74DBCC5C550B0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000143 Genomic DNA. Translation: ABA78027.1.
    RefSeqiYP_351928.1. NC_007493.2.

    Genome annotation databases

    EnsemblBacteriaiABA78027; ABA78027; RSP_1877.
    GeneIDi3719145.
    KEGGirsp:RSP_1877.
    PATRICi23150734. VBIRhoSph57909_0767.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000143 Genomic DNA. Translation: ABA78027.1 .
    RefSeqi YP_351928.1. NC_007493.2.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3OM3 X-ray 2.60 A/C 17-551 [» ]
    3OMA X-ray 2.30 A/C 17-551 [» ]
    3OMI X-ray 2.15 A/C 17-551 [» ]
    3OMN X-ray 2.15 A/C 17-551 [» ]
    ProteinModelPortali Q3J5A7.
    SMRi Q3J5A7. Positions 14-560.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272943.RSP_1877.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA78027 ; ABA78027 ; RSP_1877 .
    GeneIDi 3719145.
    KEGGi rsp:RSP_1877.
    PATRICi 23150734. VBIRhoSph57909_0767.

    Phylogenomic databases

    eggNOGi COG0843.
    HOGENOMi HOG000085274.
    KOi K02274.
    OMAi MVYGYEG.
    OrthoDBi EOG6B35XR.
    PhylomeDBi Q3J5A7.

    Enzyme and pathway databases

    BioCyci RSPH272943:GJAS-472-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q3J5A7.

    Family and domain databases

    Gene3Di 1.20.210.10. 1 hit.
    InterProi IPR000883. COX1.
    IPR023615. Cyt_c_Oxase_su1_BS.
    IPR023616. Cyt_c_Oxase_su1_dom.
    IPR014241. Cyt_c_oxidase_su1_bac.
    [Graphical view ]
    PANTHERi PTHR10422. PTHR10422. 1 hit.
    Pfami PF00115. COX1. 1 hit.
    [Graphical view ]
    PRINTSi PR01165. CYCOXIDASEI.
    SUPFAMi SSF81442. SSF81442. 1 hit.
    TIGRFAMsi TIGR02891. CtaD_CoxA. 1 hit.
    PROSITEi PS50855. COX1. 1 hit.
    PS00077. COX1_CUB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158Imported.
    2. "Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump."
      Liu J., Qin L., Ferguson-Miller S.
      Proc. Natl. Acad. Sci. U.S.A. 108:1284-1289(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 17-551 IN COMPLEX WITH CALCIUM; COPPER AND HEME.

    Entry informationi

    Entry nameiQ3J5A7_RHOS4
    AccessioniPrimary (citable) accession number: Q3J5A7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 8, 2005
    Last sequence update: November 8, 2005
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3