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Q3J5A7 (Q3J5A7_RHOS4) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length566 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding541Calcium PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding571Calcium; via carbonyl oxygen PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding591Calcium; via carbonyl oxygen PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding611Calcium PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding1021Iron (heme 1 axial ligand); via tele nitrogen PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding2841Copper; via pros nitrogen PDB 3OMA PDB 3OMI
Metal binding3331Copper; via tele nitrogen PDB 3OMA PDB 3OMI
Metal binding3341Copper; via tele nitrogen PDB 3OMA PDB 3OMI
Metal binding4191Iron (heme 2 axial ligand); via tele nitrogen PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Metal binding4211Iron (heme 1 axial ligand); via tele nitrogen PDB 3OM3 PDB 3OMA PDB 3OMI PDB 3OMN
Binding site261Chloride; via amide nitrogen PDB 3OMI PDB 3OMN
Binding site1331Chloride; via amide nitrogen PDB 3OMN

Sequences

Sequence LengthMass (Da)Tools
Q3J5A7 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 65A74DBCC5C550B0

FASTA56663,147
        10         20         30         40         50         60 
MADAAIHGHE HDRRGFFTRW FMSTNHKDIG VLYLFTGGLV GLISVAFTVY MRMELMAPGV 

        70         80         90        100        110        120 
QFMCAEHLES GLVKGFFQSL WPSAVENCTP NGHLWNVMIT GHGILMMFFV VIPALFGGFG 

       130        140        150        160        170        180 
NYFMPLHIGA PDMAFPRMNN LSYWLYVAGT SLAVASLFAP GGNGQLGSGI GWVLYPPLST 

       190        200        210        220        230        240 
SESGYSTDLA IFAVHLSGAS SILGAINMIT TFLNMRAPGM TMHKVPLFAW SIFVTAWLIL 

       250        260        270        280        290        300 
LALPVLAGAI TMLLTDRNFG TTFFQPSGGG DPVLYQHILW FFGHPEVYII VLPAFGIVSH 

       310        320        330        340        350        360 
VIATFAKKPI FGYLPMVYAM VAIGVLGFVV WAHHMYTAGL SLTQQSYFMM ATMVIAVPTG 

       370        380        390        400        410        420 
IKIFSWIATM WGGSIELKTP MLWALGFLFL FTVGGVTGIV LSQASVDRYY HDTYYVVAHF 

       430        440        450        460        470        480 
HYVMSLGAVF GIFAGIYFWI GKMSGRQYPE WAGKLHFWMM FVGANLTFFP QHFLGRQGMP 

       490        500        510        520        530        540 
RRYIDYPEAF ATWNFVSSLG AFLSFASFLF FLGVIFYTLT RGARVTANNY WNEHADTLEW 

       550        560 
TLTSPPPEHT FEQLPKREDW ERAPAH 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158.
[2]"Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump."
Liu J., Qin L., Ferguson-Miller S.
Proc. Natl. Acad. Sci. U.S.A. 108:1284-1289(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 17-551 IN COMPLEX WITH CALCIUM; CHLORIDE; COPPER AND HEME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000143 Genomic DNA. Translation: ABA78027.1.
RefSeqYP_351928.1. NC_007493.2.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3OM3X-ray2.60A/C17-551[»]
3OMAX-ray2.30A/C17-551[»]
3OMIX-ray2.15A/C17-551[»]
3OMNX-ray2.15A/C17-551[»]
ProteinModelPortalQ3J5A7.
SMRQ3J5A7. Positions 14-560.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272943.RSP_1877.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABA78027; ABA78027; RSP_1877.
GeneID3719145.
KEGGrsp:RSP_1877.
PATRIC23150734. VBIRhoSph57909_0767.

Phylogenomic databases

eggNOGCOG0843.
HOGENOMHOG000085274.
KOK02274.
OMAMVYGYEG.
OrthoDBEOG6B35XR.
PhylomeDBQ3J5A7.

Enzyme and pathway databases

BioCycRSPH272943:GJAS-472-MONOMER.

Family and domain databases

Gene3D1.20.210.10. 1 hit.
InterProIPR000883. Cyt_c_Oxase_su1.
IPR023615. Cyt_c_Oxase_su1_BS.
IPR023616. Cyt_c_Oxase_su1_dom.
IPR014241. Cyt_c_oxidase_su1_bac.
[Graphical view]
PANTHERPTHR10422. PTHR10422. 1 hit.
PfamPF00115. COX1. 1 hit.
[Graphical view]
PRINTSPR01165. CYCOXIDASEI.
SUPFAMSSF81442. SSF81442. 1 hit.
TIGRFAMsTIGR02891. CtaD_CoxA. 1 hit.
PROSITEPS50855. COX1. 1 hit.
PS00077. COX1_CUB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ3J5A7.

Entry information

Entry nameQ3J5A7_RHOS4
AccessionPrimary (citable) accession number: Q3J5A7
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: June 11, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)