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Q3J5A7

- Q3J5A7_RHOS4

UniProt

Q3J5A7 - Q3J5A7_RHOS4

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Protein
Submitted name:

Cytochrome c oxidase, aa3 type, subunit I

Gene

coxI

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi54 – 541CalciumImported
Metal bindingi57 – 571Calcium; via carbonyl oxygenImported
Metal bindingi59 – 591Calcium; via carbonyl oxygenImported
Metal bindingi61 – 611CalciumImported
Metal bindingi102 – 1021Iron (heme 1 axial ligand); via tele nitrogenImported
Metal bindingi284 – 2841Copper; via pros nitrogenImported
Metal bindingi333 – 3331Copper; via tele nitrogenImported
Metal bindingi334 – 3341Copper; via tele nitrogenImported
Metal bindingi419 – 4191Iron (heme 2 axial ligand); via tele nitrogenImported
Metal bindingi421 – 4211Iron (heme 1 axial ligand); via tele nitrogenImported

GO - Molecular functioni

  1. copper ion binding Source: InterPro
  2. cytochrome-c oxidase activity Source: UniProtKB-EC
  3. heme binding Source: InterPro
  4. iron ion binding Source: InterPro

GO - Biological processi

  1. aerobic respiration Source: InterPro
  2. electron transport chain Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Biological processi

Electron transport, Respiratory chainUniRule annotation, Transport

Keywords - Ligandi

CalciumImported, CopperImported, HemeUniRule annotationImported, Iron, Metal-binding

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-472-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Cytochrome c oxidase, aa3 type, subunit IImported (EC:1.9.3.1Imported)
Gene namesi
Name:coxIImported
ORF Names:RSP_1877Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
Taxonomic identifieri272943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002703: Chromosome 1

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: InterPro
  3. respiratory chain Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi272943.RSP_1877.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3OM3X-ray2.60A/C17-551[»]
3OMAX-ray2.30A/C17-551[»]
3OMIX-ray2.15A/C17-551[»]
3OMNX-ray2.15A/C17-551[»]
ProteinModelPortaliQ3J5A7.
SMRiQ3J5A7. Positions 14-560.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ3J5A7.

Family & Domainsi

Sequence similaritiesi

Belongs to the heme-copper respiratory oxidase family.UniRule annotation

Keywords - Domaini

TransmembraneUniRule annotation

Phylogenomic databases

eggNOGiCOG0843.
HOGENOMiHOG000085274.
KOiK02274.
OMAiMVYGYEG.
OrthoDBiEOG6B35XR.
PhylomeDBiQ3J5A7.

Family and domain databases

Gene3Di1.20.210.10. 1 hit.
InterProiIPR000883. COX1.
IPR023615. Cyt_c_Oxase_su1_BS.
IPR023616. Cyt_c_Oxase_su1_dom.
IPR014241. Cyt_c_oxidase_su1_bac.
[Graphical view]
PANTHERiPTHR10422. PTHR10422. 1 hit.
PfamiPF00115. COX1. 1 hit.
[Graphical view]
PRINTSiPR01165. CYCOXIDASEI.
SUPFAMiSSF81442. SSF81442. 1 hit.
TIGRFAMsiTIGR02891. CtaD_CoxA. 1 hit.
PROSITEiPS50855. COX1. 1 hit.
PS00077. COX1_CUB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3J5A7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MADAAIHGHE HDRRGFFTRW FMSTNHKDIG VLYLFTGGLV GLISVAFTVY
60 70 80 90 100
MRMELMAPGV QFMCAEHLES GLVKGFFQSL WPSAVENCTP NGHLWNVMIT
110 120 130 140 150
GHGILMMFFV VIPALFGGFG NYFMPLHIGA PDMAFPRMNN LSYWLYVAGT
160 170 180 190 200
SLAVASLFAP GGNGQLGSGI GWVLYPPLST SESGYSTDLA IFAVHLSGAS
210 220 230 240 250
SILGAINMIT TFLNMRAPGM TMHKVPLFAW SIFVTAWLIL LALPVLAGAI
260 270 280 290 300
TMLLTDRNFG TTFFQPSGGG DPVLYQHILW FFGHPEVYII VLPAFGIVSH
310 320 330 340 350
VIATFAKKPI FGYLPMVYAM VAIGVLGFVV WAHHMYTAGL SLTQQSYFMM
360 370 380 390 400
ATMVIAVPTG IKIFSWIATM WGGSIELKTP MLWALGFLFL FTVGGVTGIV
410 420 430 440 450
LSQASVDRYY HDTYYVVAHF HYVMSLGAVF GIFAGIYFWI GKMSGRQYPE
460 470 480 490 500
WAGKLHFWMM FVGANLTFFP QHFLGRQGMP RRYIDYPEAF ATWNFVSSLG
510 520 530 540 550
AFLSFASFLF FLGVIFYTLT RGARVTANNY WNEHADTLEW TLTSPPPEHT
560
FEQLPKREDW ERAPAH
Length:566
Mass (Da):63,147
Last modified:November 8, 2005 - v1
Checksum:i65A74DBCC5C550B0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000143 Genomic DNA. Translation: ABA78027.1.
RefSeqiYP_351928.1. NC_007493.2.

Genome annotation databases

EnsemblBacteriaiABA78027; ABA78027; RSP_1877.
GeneIDi3719145.
KEGGirsp:RSP_1877.
PATRICi23150734. VBIRhoSph57909_0767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000143 Genomic DNA. Translation: ABA78027.1 .
RefSeqi YP_351928.1. NC_007493.2.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3OM3 X-ray 2.60 A/C 17-551 [» ]
3OMA X-ray 2.30 A/C 17-551 [» ]
3OMI X-ray 2.15 A/C 17-551 [» ]
3OMN X-ray 2.15 A/C 17-551 [» ]
ProteinModelPortali Q3J5A7.
SMRi Q3J5A7. Positions 14-560.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272943.RSP_1877.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA78027 ; ABA78027 ; RSP_1877 .
GeneIDi 3719145.
KEGGi rsp:RSP_1877.
PATRICi 23150734. VBIRhoSph57909_0767.

Phylogenomic databases

eggNOGi COG0843.
HOGENOMi HOG000085274.
KOi K02274.
OMAi MVYGYEG.
OrthoDBi EOG6B35XR.
PhylomeDBi Q3J5A7.

Enzyme and pathway databases

BioCyci RSPH272943:GJAS-472-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q3J5A7.

Family and domain databases

Gene3Di 1.20.210.10. 1 hit.
InterProi IPR000883. COX1.
IPR023615. Cyt_c_Oxase_su1_BS.
IPR023616. Cyt_c_Oxase_su1_dom.
IPR014241. Cyt_c_oxidase_su1_bac.
[Graphical view ]
PANTHERi PTHR10422. PTHR10422. 1 hit.
Pfami PF00115. COX1. 1 hit.
[Graphical view ]
PRINTSi PR01165. CYCOXIDASEI.
SUPFAMi SSF81442. SSF81442. 1 hit.
TIGRFAMsi TIGR02891. CtaD_CoxA. 1 hit.
PROSITEi PS50855. COX1. 1 hit.
PS00077. COX1_CUB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158Imported.
  2. "Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump."
    Liu J., Qin L., Ferguson-Miller S.
    Proc. Natl. Acad. Sci. U.S.A. 108:1284-1289(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) OF 17-551 IN COMPLEX WITH CALCIUM; COPPER AND HEME.

Entry informationi

Entry nameiQ3J5A7_RHOS4
AccessioniPrimary (citable) accession number: Q3J5A7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: October 29, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3