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Protein
Submitted name:

Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence

Gene

RSP_2446

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseImported

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-1066-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceImported (EC:5.4.99.16Imported)
Gene namesi
ORF Names:RSP_2446Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
Taxonomic identifieri272943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002703 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi272943.RSP_2446.

Structurei

3D structure databases

ProteinModelPortaliQ3J3M7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000268420.
KOiK05343.
OMAiRDGTNNE.
OrthoDBiEOG6RVFV2.
PhylomeDBiQ3J3M7.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR022567. DUF3459.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
IPR012811. TreS_maltokin_C_dom.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF11941. DUF3459. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF56112. SSF56112. 3 hits.
TIGRFAMsiTIGR02457. TreS_Cterm. 1 hit.
TIGR02456. treS_nterm. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3J3M7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQNVSPSTV AVRRTDGIDR SQTDWYKDAI IYQLHIKAFQ DANGDGIGDF
60 70 80 90 100
AGLMQRLDYV QALGVTAIWL LPFYPSPLRD DGYDISDYRS INPSYGAMRD
110 120 130 140 150
FKLFVQEAHK RGLRVITELV INHTSDQHPW FQRARRAKKG SAARDWYVWS
160 170 180 190 200
DTDQKFPETR IIFLDTEKSN WTWDPVAGAY YWHRFYSHQP DLNFDNPRVL
210 220 230 240 250
EEVLKIMRMW LEMGVDGLRL DAIPYLVERE GTNNENLPET HDVLKKIRAN
260 270 280 290 300
LDQHFPDRML LAEANQWPED TRPYFGEGDE CHMGFHFPLM PRMYMALAQA
310 320 330 340 350
DRHPITDIIR QTPEIPEGCQ WGIFLRNHDE LTLEMVTAEE RDYMWRFYAE
360 370 380 390 400
DSRARINLGI RRRLAPLMKN DRRKIELLNQ MLMSMPGTPI VYYGDEIGMG
410 420 430 440 450
DNYYLGDRDG VRTPMQWSAD RNGGFSRCNP QQLYLPTILD PVYGHQAINV
460 470 480 490 500
EAQAADPSSL LNWTRRLIAV RKQHPAFGRG SMSLLYPRNR KVLAYVRSHE
510 520 530 540 550
GTDILCVANL SDTAQAVELD LGRFRGAVPV ELTGRSEFPP VGDLPYMLTL
560 570 580 590 600
PPYGFYWFIL SDQQALPSWH QPMPETLPDF ITLTTRDGRA ETALTGRETR
610 620 630 640 650
QLEADVLPNW LPLQRWFGAK EEKISAVKLA VLGSLSADHA LVRLEADVGG
660 670 680 690 700
EVQQYFLPAS ALWGEEQLRA GAPKLSFTLA KVRRGPQVGA LIDGAYDEQM
710 720 730 740 750
AQAMLEALRD GRRLSGAGGE VVFEPGSGLA EIADPGEPRY LGAEQSNISI
760 770 780 790 800
AFGDRLILKL YRRLRAGEQP DVEVARFLTE VAGYTHTPRY LGVVSLRPAE
810 820 830 840 850
GEATVLAAAF AFVANMGDAW RGLFDALVRD LGEFGGWSTA EAPEVEKDGF
860 870 880 890 900
SFPLTIPGLL GQRTAELHQA FATETDEAAF RMEPLTAQHL TGWAEGARRE
910 920 930 940 950
AEAMLSVLER QRTHLPDEVL PLAEALLARR EDLLARLDRV TGFEPSGALT
960 970 980 990 1000
RIHGDYHLGQ VLLAQDDVAI IDFEGEPRRT LAERREKSSP LRDVAGMLRS
1010 1020 1030 1040 1050
FDYAAAAALA RHEESFGPAS ERAVERAEAW RQQAVADFLA AYEGASAGTA
1060 1070 1080 1090 1100
SLPSDPALKE ALLDLFLVQK AVYETSYELG SRPAWVGIPL RGLLELLDRK

PA
Length:1,102
Mass (Da):124,131
Last modified:November 8, 2005 - v1
Checksum:iFAA552E91F2942A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000143 Genomic DNA. Translation: ABA78607.1.
RefSeqiWP_011337497.1. NZ_AKVW01000001.1.
YP_352508.1. NC_007493.2.

Genome annotation databases

EnsemblBacteriaiABA78607; ABA78607; RSP_2446.
GeneIDi3720043.
KEGGirsp:RSP_2446.
PATRICi23151947. VBIRhoSph57909_1365.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000143 Genomic DNA. Translation: ABA78607.1.
RefSeqiWP_011337497.1. NZ_AKVW01000001.1.
YP_352508.1. NC_007493.2.

3D structure databases

ProteinModelPortaliQ3J3M7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272943.RSP_2446.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA78607; ABA78607; RSP_2446.
GeneIDi3720043.
KEGGirsp:RSP_2446.
PATRICi23151947. VBIRhoSph57909_1365.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000268420.
KOiK05343.
OMAiRDGTNNE.
OrthoDBiEOG6RVFV2.
PhylomeDBiQ3J3M7.

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-1066-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR022567. DUF3459.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
IPR012811. TreS_maltokin_C_dom.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF11941. DUF3459. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF56112. SSF56112. 3 hits.
TIGRFAMsiTIGR02457. TreS_Cterm. 1 hit.
TIGR02456. treS_nterm. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158Imported.

Entry informationi

Entry nameiQ3J3M7_RHOS4
AccessioniPrimary (citable) accession number: Q3J3M7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: July 22, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.