SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q3J300

- Q3J300_RHOS4

UniProt

Q3J300 - Q3J300_RHOS4

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module
Gene
RSP_2679
Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-1297-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:RSP_2679Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
Taxonomic identifieri272943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002703: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi272943.RSP_2679.

Structurei

3D structure databases

ProteinModelPortaliQ3J300.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.
PhylomeDBiQ3J300.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3J300-1 [UniParc]FASTAAdd to Basket

« Hide

MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL    50
HWDFRLEWNG VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK 100
GEYGGGTVML WDRGTWEPQG DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK 150
PRPREKAENW LLIKEHDTHE SEQTEELVER HMTSVATGRT MEQIAAGKAP 200
PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR CLAALAGGRA 250
RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA 300
RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG 350
HIRGHGPEVH ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV 400
ICGWNASDKP GRPFASLVMG SYEKSRLVYR GSVGSGFGAP LFRELKPLLA 450
ERAQSACPFD RTPAEAKGAH WLKPELVAEV SFTELTAEGH IRHGVFAGLR 500
SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP DEPAPEPARK 550
PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA 600
LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS 650
GPEDFITLPD VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG 700
LDFAHVRTAA AELRGLLTDL GLPSVPMLSG GKGVHVIVPL KPKAEWESVK 750
LFSRALATHL AQEAPDRYTA TMAKAGRKGR IFIDWLRNDR GSTAIAPYSL 800
RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP LAEASARPAT 850
LGRTVIGRLE RLVAGGKP 868
Length:868
Mass (Da):95,944
Last modified:November 8, 2005 - v1
Checksum:i9DE50A85CC5E4817
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000143 Genomic DNA. Translation: ABA78834.1.
RefSeqiYP_352735.1. NC_007493.2.

Genome annotation databases

EnsemblBacteriaiABA78834; ABA78834; RSP_2679.
GeneIDi3720370.
KEGGirsp:RSP_2679.
PATRICi23152423. VBIRhoSph57909_1602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000143 Genomic DNA. Translation: ABA78834.1 .
RefSeqi YP_352735.1. NC_007493.2.

3D structure databases

ProteinModelPortali Q3J300.
ModBasei Search...

Protein-protein interaction databases

STRINGi 272943.RSP_2679.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABA78834 ; ABA78834 ; RSP_2679 .
GeneIDi 3720370.
KEGGi rsp:RSP_2679.
PATRICi 23152423. VBIRhoSph57909_1602.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.
PhylomeDBi Q3J300.

Enzyme and pathway databases

BioCyci RSPH272943:GJAS-1297-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158.

Entry informationi

Entry nameiQ3J300_RHOS4
AccessioniPrimary (citable) accession number: Q3J300
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi