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Protein
Submitted name:

Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence

Gene

RSP_2679

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-1297-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:RSP_2679Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
Taxonomic identifieri272943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002703 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi272943.RSP_2679.

Structurei

3D structure databases

ProteinModelPortaliQ3J300.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.
PhylomeDBiQ3J300.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3J300-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL
60 70 80 90 100
HWDFRLEWNG VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK
110 120 130 140 150
GEYGGGTVML WDRGTWEPQG DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK
160 170 180 190 200
PRPREKAENW LLIKEHDTHE SEQTEELVER HMTSVATGRT MEQIAAGKAP
210 220 230 240 250
PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR CLAALAGGRA
260 270 280 290 300
RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA
310 320 330 340 350
RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG
360 370 380 390 400
HIRGHGPEVH ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV
410 420 430 440 450
ICGWNASDKP GRPFASLVMG SYEKSRLVYR GSVGSGFGAP LFRELKPLLA
460 470 480 490 500
ERAQSACPFD RTPAEAKGAH WLKPELVAEV SFTELTAEGH IRHGVFAGLR
510 520 530 540 550
SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP DEPAPEPARK
560 570 580 590 600
PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA
610 620 630 640 650
LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS
660 670 680 690 700
GPEDFITLPD VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG
710 720 730 740 750
LDFAHVRTAA AELRGLLTDL GLPSVPMLSG GKGVHVIVPL KPKAEWESVK
760 770 780 790 800
LFSRALATHL AQEAPDRYTA TMAKAGRKGR IFIDWLRNDR GSTAIAPYSL
810 820 830 840 850
RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP LAEASARPAT
860
LGRTVIGRLE RLVAGGKP
Length:868
Mass (Da):95,944
Last modified:November 8, 2005 - v1
Checksum:i9DE50A85CC5E4817
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000143 Genomic DNA. Translation: ABA78834.1.
RefSeqiWP_011337655.1. NZ_AKVW01000001.1.
YP_352735.1. NC_007493.2.

Genome annotation databases

EnsemblBacteriaiABA78834; ABA78834; RSP_2679.
GeneIDi3720370.
KEGGirsp:RSP_2679.
PATRICi23152423. VBIRhoSph57909_1602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000143 Genomic DNA. Translation: ABA78834.1.
RefSeqiWP_011337655.1. NZ_AKVW01000001.1.
YP_352735.1. NC_007493.2.

3D structure databases

ProteinModelPortaliQ3J300.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272943.RSP_2679.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABA78834; ABA78834; RSP_2679.
GeneIDi3720370.
KEGGirsp:RSP_2679.
PATRICi23152423. VBIRhoSph57909_1602.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.
PhylomeDBiQ3J300.

Enzyme and pathway databases

BioCyciRSPH272943:GJAS-1297-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158Imported.

Entry informationi

Entry nameiQ3J300_RHOS4
AccessioniPrimary (citable) accession number: Q3J300
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: May 27, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.