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Q3J300

- Q3J300_RHOS4

UniProt

Q3J300 - Q3J300_RHOS4

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module

Gene

RSP_2679

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (08 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRSPH272943:GJAS-1297-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:RSP_2679Imported
    OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)Imported
    Taxonomic identifieri272943 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
    ProteomesiUP000002703: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi272943.RSP_2679.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3J300.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.
    PhylomeDBiQ3J300.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3J300-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL    50
    HWDFRLEWNG VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK 100
    GEYGGGTVML WDRGTWEPQG DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK 150
    PRPREKAENW LLIKEHDTHE SEQTEELVER HMTSVATGRT MEQIAAGKAP 200
    PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR CLAALAGGRA 250
    RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA 300
    RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG 350
    HIRGHGPEVH ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV 400
    ICGWNASDKP GRPFASLVMG SYEKSRLVYR GSVGSGFGAP LFRELKPLLA 450
    ERAQSACPFD RTPAEAKGAH WLKPELVAEV SFTELTAEGH IRHGVFAGLR 500
    SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP DEPAPEPARK 550
    PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA 600
    LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS 650
    GPEDFITLPD VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG 700
    LDFAHVRTAA AELRGLLTDL GLPSVPMLSG GKGVHVIVPL KPKAEWESVK 750
    LFSRALATHL AQEAPDRYTA TMAKAGRKGR IFIDWLRNDR GSTAIAPYSL 800
    RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP LAEASARPAT 850
    LGRTVIGRLE RLVAGGKP 868
    Length:868
    Mass (Da):95,944
    Last modified:November 8, 2005 - v1
    Checksum:i9DE50A85CC5E4817
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000143 Genomic DNA. Translation: ABA78834.1.
    RefSeqiYP_352735.1. NC_007493.2.

    Genome annotation databases

    EnsemblBacteriaiABA78834; ABA78834; RSP_2679.
    GeneIDi3720370.
    KEGGirsp:RSP_2679.
    PATRICi23152423. VBIRhoSph57909_1602.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000143 Genomic DNA. Translation: ABA78834.1 .
    RefSeqi YP_352735.1. NC_007493.2.

    3D structure databases

    ProteinModelPortali Q3J300.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272943.RSP_2679.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABA78834 ; ABA78834 ; RSP_2679 .
    GeneIDi 3720370.
    KEGGi rsp:RSP_2679.
    PATRICi 23152423. VBIRhoSph57909_1602.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.
    PhylomeDBi Q3J300.

    Enzyme and pathway databases

    BioCyci RSPH272943:GJAS-1297-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158Imported.

    Entry informationi

    Entry nameiQ3J300_RHOS4
    AccessioniPrimary (citable) accession number: Q3J300
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 8, 2005
    Last sequence update: November 8, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3