Q3J300 (Q3J300_RHOS4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ABA78834.1

Gene names

Ordered Locus Names:	RHOS4_12660
ORF Names:	RSP_2679 EMBL ABA78834.1

Organism

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) [Reference proteome] [HAMAP] EMBL ABA78834.1

Taxonomic identifier

272943 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter › Rhodobacter sphaeroides

Protein attributes

Sequence length	868 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABA78834.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3J300 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 9DE50A85CC5E4817	FASTA	868	95,944
	10 20 30 40 50 60 MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL HWDFRLEWNG 70 80 90 100 110 120 VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK GEYGGGTVML WDRGTWEPQG 130 140 150 160 170 180 DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK PRPREKAENW LLIKEHDTHE SEQTEELVER 190 200 210 220 230 240 HMTSVATGRT MEQIAAGKAP PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR 250 260 270 280 290 300 CLAALAGGRA RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA 310 320 330 340 350 360 RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG HIRGHGPEVH 370 380 390 400 410 420 ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV ICGWNASDKP GRPFASLVMG 430 440 450 460 470 480 SYEKSRLVYR GSVGSGFGAP LFRELKPLLA ERAQSACPFD RTPAEAKGAH WLKPELVAEV 490 500 510 520 530 540 SFTELTAEGH IRHGVFAGLR SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP 550 560 570 580 590 600 DEPAPEPARK PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA 610 620 630 640 650 660 LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS GPEDFITLPD 670 680 690 700 710 720 VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG LDFAHVRTAA AELRGLLTDL 730 740 750 760 770 780 GLPSVPMLSG GKGVHVIVPL KPKAEWESVK LFSRALATHL AQEAPDRYTA TMAKAGRKGR 790 800 810 820 830 840 IFIDWLRNDR GSTAIAPYSL RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP 850 860 LAEASARPAT LGRTVIGRLE RLVAGGKP

References

[1]

"Complete sequence of chromosome 1 of Rhodobacter sphaeroides 2.4.1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Richardson P., Mackenzie C., Choudhary M., Larimer F., Hauser L.J., Land M., Donohue T.J., Kaplan S. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000143 Genomic DNA. Translation: ABA78834.1.
RefSeq	YP_352735.1. NC_007493.1.
3D structure databases
ProteinModelPortal	Q3J300.
ModBase	Search...
Protein-protein interaction databases
STRING	272943.RSP_2679.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3720370.
KEGG	rsp:RSP_2679.
PATRIC	23152423. VBIRhoSph57909_1602.
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	DWTIRSI.
ProtClustDB	CLSK886471.
Enzyme and pathway databases
BioCyc	RSPH272943:GJAS-1297-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3J300_RHOS4

Accession

Primary (citable) accession number: Q3J300

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)