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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:RHOS4_16220
ORF Names:RSP_0022
OrganismiRhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Taxonomic identifieri272943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
Proteomesi
  • UP000002703 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000554561 – 15450S ribosomal protein L13Add BLAST154

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi272943.RSP_0022.

Structurei

3D structure databases

ProteinModelPortaliQ3J1Z4.
SMRiQ3J1Z4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiVLMGKHK.
OrthoDBiPOG091H013T.
PhylomeDBiQ3J1Z4.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3J1Z4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFTATPAD IEKKWILIDA EGVVLGRLAT IVANILRGKN KPTFTPHMDM
60 70 80 90 100
GDNVIVINAD KVQMTGNKRA DKRYYWHTGH PGGVKFRTAE QVLEGAHPER
110 120 130 140 150
VVLKAVERMI SRNSLGRQQM TNLRVYAGAE HPHEAQQPTV LDVKSLNPKN

TRSA
Length:154
Mass (Da):17,208
Last modified:November 8, 2005 - v1
Checksum:i42CBEFD6DBECFF1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000143 Genomic DNA. Translation: ABA79190.1.
RefSeqiWP_002720164.1. NZ_AKVW01000001.1.
YP_353091.1. NC_007493.2.

Genome annotation databases

EnsemblBacteriaiABA79190; ABA79190; RSP_0022.
GeneIDi3720157.
KEGGirsp:RSP_0022.
PATRICifig|272943.9.peg.1952.

Similar proteinsi

Entry informationi

Entry nameiRL13_RHOS4
AccessioniPrimary (citable) accession number: Q3J1Z4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: November 8, 2005
Last modified: October 25, 2017
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families