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Protein
Submitted name:

Halorhodopsin

Gene

hop

Organism
Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) (Halobacterium pharaonis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciNPHA348780:GJX0-332-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
HalorhodopsinImported
Gene namesi
Name:hopImported
Ordered Locus Names:NP_0642AImported
OrganismiNatronomonas pharaonis (strain ATCC 35678 / DSM 2160) (Halobacterium pharaonis)Imported
Taxonomic identifieri348780 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatronomonas
Proteomesi
  • UP000002698 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei33 – 5422HelicalSequence analysisAdd
BLAST
Transmembranei66 – 8520HelicalSequence analysisAdd
BLAST
Transmembranei124 – 14219HelicalSequence analysisAdd
BLAST
Transmembranei149 – 17123HelicalSequence analysisAdd
BLAST
Transmembranei177 – 19519HelicalSequence analysisAdd
BLAST
Transmembranei216 – 23924HelicalSequence analysisAdd
BLAST
Transmembranei245 – 26723HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi348780.NP0642A.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3A7KX-ray2.00A/B/D1-291[»]
3ABWX-ray1.90A/B/D1-291[»]
4QRYX-ray2.20A/B/C/E/F/G1-291[»]
ProteinModelPortaliQ3ITX1.
SMRiQ3ITX1. Positions 31-274.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ3ITX1.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiarCOG02811. Archaea.
COG5524. LUCA.
HOGENOMiHOG000038084.
KOiK04642.
OMAiGRYLTWT.

Family and domain databases

InterProiIPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
[Graphical view]
PfamiPF01036. Bac_rhodopsin. 1 hit.
[Graphical view]
PRINTSiPR00251. BACTRLOPSIN.
SMARTiSM01021. Bac_rhodopsin. 1 hit.
[Graphical view]
PROSITEiPS00950. BACTERIAL_OPSIN_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ITX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTETLPPVTE SAVALQAEVT QRELFEFVLN DPLLASSLYI NIALAGLSIL
60 70 80 90 100
LFVFMTRGLD DPRAKLIAVS TILVPVVSIA SYTGLASGLT ISVLEMPAGH
110 120 130 140 150
FAEGSSVMLG GEEVDGVVTM WGRYLTWALS TPMILLALGL LAGSNATKLF
160 170 180 190 200
TAITFDIAMC VTGLAAALTT SSHLMRWFWY AISCACFIVV LYILLVEWAQ
210 220 230 240 250
DAKAAGTADI FSTLKLLTVV MWLGYPIVWA LGVEGVAVLP VGYTSWAYSA
260 270 280 290
LDIVAKYIFA FLLLNYLTSN EGVVSGSILD VPSASGAPAD D
Length:291
Mass (Da):30,963
Last modified:November 8, 2005 - v1
Checksum:i6E801B4D74782D5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48412.1.

Genome annotation databases

EnsemblBacteriaiCAI48412; CAI48412; NP_0642A.
KEGGinph:NP_0642A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48412.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3A7KX-ray2.00A/B/D1-291[»]
3ABWX-ray1.90A/B/D1-291[»]
4QRYX-ray2.20A/B/C/E/F/G1-291[»]
ProteinModelPortaliQ3ITX1.
SMRiQ3ITX1. Positions 31-274.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi348780.NP0642A.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI48412; CAI48412; NP_0642A.
KEGGinph:NP_0642A.

Phylogenomic databases

eggNOGiarCOG02811. Archaea.
COG5524. LUCA.
HOGENOMiHOG000038084.
KOiK04642.
OMAiGRYLTWT.

Enzyme and pathway databases

BioCyciNPHA348780:GJX0-332-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ3ITX1.

Family and domain databases

InterProiIPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
[Graphical view]
PfamiPF01036. Bac_rhodopsin. 1 hit.
[Graphical view]
PRINTSiPR00251. BACTRLOPSIN.
SMARTiSM01021. Bac_rhodopsin. 1 hit.
[Graphical view]
PROSITEiPS00950. BACTERIAL_OPSIN_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis."
    Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D.
    Genome Res. 15:1336-1343(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35678 / DSM 2160Imported.
  2. "Binding mode of azide ion to pharaonis halorhodopsin."
    Kanada S., Kouyama T.
    Submitted (DEC-2009) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS).
  3. "Crystal structure of the light-driven chloride pump halorhodopsin from Natronomonas pharaonis."
    Kouyama T., Kanada S., Takeguchi Y., Narusawa A., Murakami M., Ihara K.
    J. Mol. Biol. 396:564-579(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).
  4. "Crystal structures of the L1, L2, N, and O states of pharaonis halorhodopsin."
    Kouyama T., Kawaguchi H., Nakanishi T., Kubo H., Murakami M.
    Biophys. J. 108:2680-2690(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS).

Entry informationi

Entry nameiQ3ITX1_NATPD
AccessioniPrimary (citable) accession number: Q3ITX1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: June 8, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.