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Protein
Submitted name:

Halorhodopsin

Gene

hop

Organism
Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
HalorhodopsinImported
Gene namesi
Name:hopImported
Ordered Locus Names:NP_0642AImported
OrganismiNatronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)Imported
Taxonomic identifieri348780 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatronomonas
Proteomesi
  • UP000002698 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei33 – 54HelicalSequence analysisAdd BLAST22
Transmembranei66 – 85HelicalSequence analysisAdd BLAST20
Transmembranei124 – 142HelicalSequence analysisAdd BLAST19
Transmembranei149 – 171HelicalSequence analysisAdd BLAST23
Transmembranei177 – 195HelicalSequence analysisAdd BLAST19
Transmembranei216 – 239HelicalSequence analysisAdd BLAST24
Transmembranei245 – 267HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi348780.NP0642A.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3A7KX-ray2.00A/B/D1-291[»]
3ABWX-ray1.90A/B/D1-291[»]
4QRYX-ray2.20A/B/C/E/F/G1-291[»]
5B0WX-ray1.70A/B/D/E/F/G1-291[»]
5ETZX-ray1.80A/B/D1-291[»]
ProteinModelPortaliQ3ITX1.
SMRiQ3ITX1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ3ITX1.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiarCOG02811. Archaea.
COG5524. LUCA.
HOGENOMiHOG000038084.
KOiK04642.
OMAiGRYLTWT.

Family and domain databases

InterProiIPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
[Graphical view]
PfamiPF01036. Bac_rhodopsin. 1 hit.
[Graphical view]
PRINTSiPR00251. BACTRLOPSIN.
SMARTiSM01021. Bac_rhodopsin. 1 hit.
[Graphical view]
PROSITEiPS00950. BACTERIAL_OPSIN_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ITX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTETLPPVTE SAVALQAEVT QRELFEFVLN DPLLASSLYI NIALAGLSIL
60 70 80 90 100
LFVFMTRGLD DPRAKLIAVS TILVPVVSIA SYTGLASGLT ISVLEMPAGH
110 120 130 140 150
FAEGSSVMLG GEEVDGVVTM WGRYLTWALS TPMILLALGL LAGSNATKLF
160 170 180 190 200
TAITFDIAMC VTGLAAALTT SSHLMRWFWY AISCACFIVV LYILLVEWAQ
210 220 230 240 250
DAKAAGTADI FSTLKLLTVV MWLGYPIVWA LGVEGVAVLP VGYTSWAYSA
260 270 280 290
LDIVAKYIFA FLLLNYLTSN EGVVSGSILD VPSASGAPAD D
Length:291
Mass (Da):30,963
Last modified:November 8, 2005 - v1
Checksum:i6E801B4D74782D5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48412.1.

Genome annotation databases

EnsemblBacteriaiCAI48412; CAI48412; NP_0642A.
KEGGinph:NP_0642A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48412.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3A7KX-ray2.00A/B/D1-291[»]
3ABWX-ray1.90A/B/D1-291[»]
4QRYX-ray2.20A/B/C/E/F/G1-291[»]
5B0WX-ray1.70A/B/D/E/F/G1-291[»]
5ETZX-ray1.80A/B/D1-291[»]
ProteinModelPortaliQ3ITX1.
SMRiQ3ITX1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi348780.NP0642A.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI48412; CAI48412; NP_0642A.
KEGGinph:NP_0642A.

Phylogenomic databases

eggNOGiarCOG02811. Archaea.
COG5524. LUCA.
HOGENOMiHOG000038084.
KOiK04642.
OMAiGRYLTWT.

Miscellaneous databases

EvolutionaryTraceiQ3ITX1.

Family and domain databases

InterProiIPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
[Graphical view]
PfamiPF01036. Bac_rhodopsin. 1 hit.
[Graphical view]
PRINTSiPR00251. BACTRLOPSIN.
SMARTiSM01021. Bac_rhodopsin. 1 hit.
[Graphical view]
PROSITEiPS00950. BACTERIAL_OPSIN_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ3ITX1_NATPD
AccessioniPrimary (citable) accession number: Q3ITX1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: November 30, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.