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Protein

Putative HTH-type transcriptional regulatory protein NP_1320A

Gene

NP_1320A

Organism
Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi143 – 162H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein NP_1320AUniRule annotation
Gene namesi
Ordered Locus Names:NP_1320A
OrganismiNatronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)
Taxonomic identifieri348780 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatronomonas
Proteomesi
  • UP000002698 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002593621 – 317Putative HTH-type transcriptional regulatory protein NP_1320AAdd BLAST317

Interactioni

Protein-protein interaction databases

STRINGi348780.NP1320A.

Structurei

3D structure databases

ProteinModelPortaliQ3ISY4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini132 – 189HTH cro/C1-typeUniRule annotationAdd BLAST58

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ISY4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRSALVGNI TAMLEDAGFT VSDRCAIRPK SFDIAARRGD DVLLLKVLAN
60 70 80 90 100
IDAFDGYTGT EMRRLGEYLD ATPLVIGLRT RDEELKPGVV YFRHGVPVFS
110 120 130 140 150
PDTAMDLFIE EVPPLIYAAP GGLYVNIDGD LLSDIRSQED MSLGKLANEL
160 170 180 190 200
GVSRRTVSKY EDGMSASVEV AAELEEIFDR KLASPVEVLS GAEEVRDDVD
210 220 230 240 250
EPEAPEADPD DAEIVTVLTR VGFEVHPTMQ APFKAVSEDE KRERKVLTGH
260 270 280 290 300
SEFNRTAEKR ARIMSSVGHV TRTRSVYVVD STKRDSVDGT ALIEREEFER
310
IHDSDELENL IRERAEG
Length:317
Mass (Da):35,135
Last modified:November 8, 2005 - v1
Checksum:i7131F4435D87E7B9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48751.1.
RefSeqiWP_011322386.1. NC_007426.1.

Genome annotation databases

EnsemblBacteriaiCAI48751; CAI48751; NP_1320A.
GeneIDi3701114.
KEGGinph:NP_1320A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI48751.1.
RefSeqiWP_011322386.1. NC_007426.1.

3D structure databases

ProteinModelPortaliQ3ISY4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi348780.NP1320A.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI48751; CAI48751; NP_1320A.
GeneIDi3701114.
KEGGinph:NP_1320A.

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1320_NATPD
AccessioniPrimary (citable) accession number: Q3ISY4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: November 8, 2005
Last modified: November 2, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.