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Protein

DNA-directed RNA polymerase subunit L

Gene

rpoL

Organism
Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit LUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoLUniRule annotation
Ordered Locus Names:NP_4162A
OrganismiNatronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / NBRC 14720 / NCIMB 2260 / Gabara) (Halobacterium pharaonis)
Taxonomic identifieri348780 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeNatronomonas
Proteomesi
  • UP000002698 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002324691 – 94DNA-directed RNA polymerase subunit LAdd BLAST94

Proteomic databases

PRIDEiQ3INY0.

Interactioni

Protein-protein interaction databases

STRINGi348780.NP4162A.

Structurei

3D structure databases

ProteinModelPortaliQ3INY0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04111. Archaea.
COG1761. LUCA.
HOGENOMiHOG000179862.
KOiK03056.
OMAiTTATYDM.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L. 1 hit.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
PfamiPF13656. RNA_pol_L_2. 1 hit.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3INY0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLRVIENLE TELAIEIEGE DHTFMNVLKG ALLELDGVTA ATYDVNPEQS
60 70 80 90
GGQTEPIVTI KTDGSIDPLD ALEQGASRVR DKTDAFEEAF EAAA
Length:94
Mass (Da):10,151
Last modified:November 8, 2005 - v1
Checksum:i9596384719066731
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI50172.1.
RefSeqiWP_011323788.1. NC_007426.1.

Genome annotation databases

EnsemblBacteriaiCAI50172; CAI50172; NP_4162A.
GeneIDi3703160.
KEGGinph:NP_4162A.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR936257 Genomic DNA. Translation: CAI50172.1.
RefSeqiWP_011323788.1. NC_007426.1.

3D structure databases

ProteinModelPortaliQ3INY0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi348780.NP4162A.

Proteomic databases

PRIDEiQ3INY0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI50172; CAI50172; NP_4162A.
GeneIDi3703160.
KEGGinph:NP_4162A.

Phylogenomic databases

eggNOGiarCOG04111. Archaea.
COG1761. LUCA.
HOGENOMiHOG000179862.
KOiK03056.
OMAiTTATYDM.

Family and domain databases

HAMAPiMF_00261. RNApol_arch_L. 1 hit.
InterProiIPR009025. RBP11-like_dimer.
IPR008193. RNA_pol_Rpb11_13-16kDa_CS.
IPR022905. RNAP_L.
[Graphical view]
PfamiPF13656. RNA_pol_L_2. 1 hit.
[Graphical view]
SUPFAMiSSF55257. SSF55257. 1 hit.
PROSITEiPS01154. RNA_POL_L_13KD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRPOL_NATPD
AccessioniPrimary (citable) accession number: Q3INY0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: November 8, 2005
Last modified: November 30, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.