Q3IMX2 (RL6_NATPD) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L6P

Gene names

Name:	rpl6p
Ordered Locus Names:	NP_4886A

Organism

Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) [Complete proteome] [HAMAP]

Taxonomic identifier

348780 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Natronomonas › Natronomonas pharaonis

Protein attributes

Sequence length	177 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 177	177	50S ribosomal protein L6P HAMAP-Rule MF_01365		PRO_0000260993

Sequences

	Sequence		Length	Mass (Da)
	Q3IMX2 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: C99E68E8A1ED9F45	FASTA	177	19,587
	10 20 30 40 50 60 MRTEIEIPDE VTATMDHLEV TVEGPNGSVT RRLWYPDITV DVEDGAVVIE TDDDNAKTRS 70 80 90 100 110 120 TVGTFESHVT NMFHGVTEGW EYSMEVFYSH FPMQVSVEGG DIVIENFLGE KAPRKTPVRG 130 140 150 160 170 DTSVEVDGEE LTVSGPSIED VGQTAADIEQ LTRVSDKDTR VFQDGVYITE TPDRGDV

References

[1]

"Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis." Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. Genome Res. 15:1336-1343(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 2160 / ATCC 35678.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR936257 Genomic DNA. Translation: CAI50534.1.
RefSeq	YP_331168.1. NC_007426.1.
3D structure databases
HSSP	HSSP built from PDB template 1VQO based on UniProtKB P14135.
ProteinModelPortal	Q3IMX2.
SMR	Q3IMX2. Positions 2-172.
ModBase	Search...
Protein-protein interaction databases
STRING	348780.NP4886A.
Proteomic databases
PRIDE	Q3IMX2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAI50534; CAI50534; NP_4886A.
GeneID	3703147.
KEGG	nph:NP4886A.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0097.
HOGENOM	HOG000039905.
KO	K02933.
OMA	AVRTVCS.
ProtClustDB	PRK05518.
Enzyme and pathway databases
BioCyc	NPHA348780:GJX0-2477-MONOMER.
Family and domain databases
Gene3D	3.90.930.12. 2 hits.
HAMAP	MF_01365_A. Ribosomal_L6_A.
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR019907. Ribosomal_L6P_arc. [Graphical view]
PANTHER	PTHR11655. PTHR11655. 1 hit. PTHR11655:SF1. PTHR11655:SF1. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
TIGRFAMs	TIGR03653. arch_L6P. 1 hit.
PROSITE	PS00700. RIBOSOMAL_L6_2. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL6_NATPD

Accession

Primary (citable) accession number: Q3IMX2

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 28, 2006
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program