Q3IKU6 (Q3IKU6_PSEHT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease I EMBL CAI86330.1
EC=3.1.11.1 EMBL CAI86330.1

Gene names

Name:	sbcB EMBL CAI86330.1
Ordered Locus Names:	PSHAa1255

Organism

Pseudoalteromonas haloplanktis (strain TAC 125) [Complete proteome] [HAMAP]

Taxonomic identifier

326442 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas › Pseudoalteromonas haloplanktis

Protein attributes

Sequence length	481 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL CAI86330.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	exodeoxyribonuclease I activity Inferred from electronic annotation. Source: EC nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3IKU6 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 3F2888927DD75A9E	FASTA	481	55,021
	10 20 30 40 50 60 MAYQEQNQAT IYWHDYETWG ASPQKDKPSQ FAGVRTDLDL NIIGEPLIEY CKPQADYLPH 70 80 90 100 110 120 PEACLITGIT PQVAMKKGLV EAEFIAKIHA QFSVPNTCVA GYNSIRFDDE VSRYSFYRNF 130 140 150 160 170 180 YDPYEREYKN NNSRWDIIDL VRACYALRPE GIEWPLKEDG SPSFKLEHLT VANGIEHAAA 190 200 210 220 230 240 HDALSDVTAT IALAKLIKDK QPKLYNFFFS LRGKKALAEL VDVFNMTPLV HTSSRIPATQ 250 260 270 280 290 300 GCTSWVAPMS FHPVNKNAVI CFDLTQSPQV LIDLSVEQLR KRLYTKRIDL AEDELPVGLK 310 320 330 340 350 360 LVHLNKCPIL APAKTLLPEN AARLGIDREQ CLKNLAVLKA NSELRDKVTE VFNEQGDYSA 370 380 390 400 410 420 TTNVDYLLYD GFTSHADKAK FAIIRDAKPE DLADLKLDFE NKKFNTLLFR YRARNWPQTL 430 440 450 460 470 480 NQQELDQWRQ YCQNKLMHGE DQPSINAQDF MITLENLAHE HDDSEKNLTI LKALYNYAQS M

References

[1]

"Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125." Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P., Cheung F., Cruveiller S., Damico S., Duilio A., Fang G., Feller G., Mangenot S., Marino G., Nilsson J., Parilli E., Rocha E., Rouy Z. , Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A. Genome Res. 15:1325-1335(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TAC 125.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR954246 Genomic DNA. Translation: CAI86330.1.
RefSeq	YP_339773.1. NC_007481.1.
3D structure databases
ProteinModelPortal	Q3IKU6.
ModBase	Search...
Protein-protein interaction databases
STRING	326442.PSHAa1255.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAI86330; CAI86330; PSHAa1255.
GeneID	3710710.
KEGG	pha:PSHAa1255.
PATRIC	32296087. VBIPseHal105694_1209.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2925.
HOGENOM	HOG000276591.
KO	K01141.
OMA	PYAREWQ.
ProtClustDB	PRK11779.
Enzyme and pathway databases
BioCyc	PHAL326442:GJIU-1289-MONOMER.
Family and domain databases
InterPro	IPR023607. Exodeoxyribonuclease_I. IPR013620. Exonuc_X-T_C. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF08411. Exonuc_X-T_C. 1 hit. PF00929. RNase_T. 1 hit. [Graphical view]
PIRSF	PIRSF000977. Exodeoxyribonuclease_I. 1 hit.
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q3IKU6_PSEHT

Accession

Primary (citable) accession number: Q3IKU6

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)