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Q3IH55 (Q3IH55_PSEHT) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative chondroitin AC/alginate lyase EMBL CAI86820.1
Gene names
Name:alyll EMBL CAI86820.1
Ordered Locus Names:PSHAa1748
OrganismPseudoalteromonas haloplanktis (strain TAC 125) [Complete proteome] [HAMAP]
Taxonomic identifier326442 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length738 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL CAI86820.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: InterPro

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3IH55 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: D45A3476650B9822

FASTA73882,397
        10         20         30         40         50         60 
MYLLKCQTRF KTVAIAVSTL FLSLGAHAAH PNLVITTDDV KHMRQAISSN SSGKFATAFE 

        70         80         90        100        110        120 
LLKAQVDEQI AHPITVPVPK DGGGGYTHER HKKNYQLMYN AGIIYQLSQD DKYANYVRDM 

       130        140        150        160        170        180 
LLDYAKLYPT LDVHPKRKVD SQNPGKFFWQ SLNEAMWLVY TIQAYDLVYD SLNAANIKTI 

       190        200        210        220        230        240 
ENDLLRPVSL FTSVGQPSTF NKVHNHGTWA TAGVGMAGYV LGEPEWVEKS LYDLEKSGKG 

       250        260        270        280        290        300 
GFIKQLEMLF SPQGYYNEGP YYQRFALLPF VTFAKAIENN EPQRKIFEYR DGILLKAIDT 

       310        320        330        340        350        360 
TIQLSYNGLF FPINDAIKSK GIDTIELVHG VTTAYGLTND AGYLDIAKQQ EQIILSGDGL 

       370        380        390        400        410        420 
KVAQALDSDM AKPYSFKSVA FGDGNDGKQG ALVVMRTQVG GDQALLFKPA AQGLGHGHFD 

       430        440        450        460        470        480 
KLTWQFYDHG NEIVSDYGAA RFLNVEAKYG GRYLPENETY AKHTVAHNTV VVDETTHFNA 

       490        500        510        520        530        540 
NVDVGNNNHP TLNFFETNEF GTVSSGEIST AYKGVELERT LALINLPELE SSIALDVFNV 

       550        560        570        580        590        600 
AADNAHQFDL PLHYKGQLID TSFELKASTT QLAALGSKNG YQHLWLKGQA QPQNGLAKVT 

       610        620        630        640        650        660 
WLNDNGRFYT QTSLVKGDES FLFTQIGAND PQFNLRNENG FIRRVNAQKQ HTFISVLEPH 

       670        680        690        700        710        720 
GEYNPSKEYT LEAVSRVSAL KYTEQDDLVL VQLSIKGKSY LVAINKAHST IKNTFKFQNK 

       730 
VFTLNSRLGV YAMNNNQE

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References

[1]"Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125."
Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N., Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G., Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C. expand/collapse author list , Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A.
Genome Res. 15:1325-1335(2005) [PubMed: 16169927] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR954246 Genomic DNA. Translation: CAI86820.1.
RefSeqYP_340263.1. NC_007481.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ3IH55.

Protein family/group databases

CAZyPL17. Polysaccharide Lyase Family 17.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3708803.
GenomeReviewsGene locus PSHAa1748 in contig CR954246_GR.
KEGGpha:PSHAa1748.
NMPDRfig|326442.4.peg.1140.
PATRIC32297065. VBIPseHal105694_1693.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG45022.
HOGENOMHBG742331.
OMANGYQHLW.
ProtClustDBCLSK769500.

Enzyme and pathway databases

BioCycPHAL326442:PSHAA1748-MONOMER.

Family and domain databases

InterProIPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3IH55_PSEHT
AccessionPrimary (citable) accession number: Q3IH55
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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