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Q3IES5 (Q3IES5_PSEHT) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL CAI87233.1
Gene names
Ordered Locus Names:PSHAa2177 EMBL CAI87233.1
OrganismPseudoalteromonas haloplanktis (strain TAC 125) [Complete proteome] [HAMAP] EMBL CAI87233.1
Taxonomic identifier326442 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAI87233.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3IES5 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: 0CEFFAAA672C85A2

FASTA28031,282
        10         20         30         40         50         60 
MFYIKLITLI TAVLFSSIVN ATLPKVLLAK VYDETKHSDV SNYLVSEKFD GVRAIWTGKQ 

        70         80         90        100        110        120 
FVTRQGNVIN APEWFTAPLP KVWLDGELWT KHQHFAVLSG IVRTKTPNNH DWQSITYQVF 

       130        140        150        160        170        180 
DMPDANVPFS QRYSNYSHLV AGLNSPHIKA IKQHQFTNNQ LLTNYFKNIT AQGGEGVMLH 

       190        200        210        220        230        240 
LASAKHADGR SDALLKLKPY LDAEAIVIAY LPGKGKYQGM LGALRVKTAQ GQLFSIGTGF 

       250        260        270        280 
SDAERESPPA LGSTITYRFH GLTKNGLPRF ASFLRVRESL 

« Hide

References

[1]"Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125."
Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N., Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G., Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C. expand/collapse author list , Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A.
Genome Res. 15:1325-1335(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TAC 125.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR954246 Genomic DNA. Translation: CAI87233.1.
RefSeqYP_340675.1. NC_007481.1.

3D structure databases

ProteinModelPortalQ3IES5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING326442.PSHAa2177.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAI87233; CAI87233; PSHAa2177.
GeneID3709032.
KEGGpha:PSHAa2177.
PATRIC32297943. VBIPseHal105694_2095.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycPHAL326442:GJIU-2234-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3IES5_PSEHT
AccessionPrimary (citable) accession number: Q3IES5
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: June 11, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)