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Protein
Submitted name:

Putative glycerol diffusion channel

Gene

glpF

Organism
Pseudoalteromonas haloplanktis (strain TAC 125)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciPHAL326442:GJIU-3612-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative glycerol diffusion channelImported
Gene namesi
Name:glpFImported
Ordered Locus Names:PSHAb0552Imported
OrganismiPseudoalteromonas haloplanktis (strain TAC 125)Imported
Taxonomic identifieri326442 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
Proteomesi
  • UP000006843 Componenti: Chromosome II

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 3920HelicalSequence analysisAdd
BLAST
Transmembranei59 – 7719HelicalSequence analysisAdd
BLAST
Transmembranei98 – 12023HelicalSequence analysisAdd
BLAST
Transmembranei150 – 16819HelicalSequence analysisAdd
BLAST
Transmembranei180 – 20122HelicalSequence analysisAdd
BLAST
Transmembranei238 – 25821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi326442.PSHAb0552.

Structurei

3D structure databases

ProteinModelPortaliQ3ICL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the MIP/aquaporin (TC 1.A.8) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105D8C. Bacteria.
COG0580. LUCA.
HOGENOMiHOG000288285.
KOiK02440.
OMAiLSYQSGW.
OrthoDBiEOG6P8TRZ.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000425. MIP.
IPR022357. MIP_CS.
[Graphical view]
PANTHERiPTHR19139. PTHR19139. 1 hit.
PfamiPF00230. MIP. 1 hit.
[Graphical view]
PRINTSiPR00783. MINTRINSICP.
SUPFAMiSSF81338. SSF81338. 1 hit.
TIGRFAMsiTIGR00861. MIP. 1 hit.
PROSITEiPS00221. MIP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ICL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFIKVDLILA FSKEYKMTPF IAEILGTALL ILIGGGVVAN NILKKTIGEG
60 70 80 90 100
GGWMAVTTAW GLAVFIGVVV AGPYSGAHLN PAVTLSLAVA EKFSWTEVPA
110 120 130 140 150
YIAAQFIGAM IGAFLVYVIY KDHFDATDDA ELKRAVFCTA PAIPNTFRNI
160 170 180 190 200
ISEIVGTFVL LICVFYFSAA EIDNGTGTKI GLGSIGAIPV AFVVWGIGLS
210 220 230 240 250
LGGTTGYAIN PARDLGPRIV HALLPIKGKI DSNWSYSWIP VLGPTIGGTL

AALLYTILS
Length:259
Mass (Da):27,299
Last modified:November 8, 2005 - v1
Checksum:i25F4FC585566A3AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR954247 Genomic DNA. Translation: CAI89588.1.

Genome annotation databases

EnsemblBacteriaiCAI89588; CAI89588; PSHAb0552.
KEGGipha:PSHAb0552.
PATRICi32300708. VBIPseHal105694_3458.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR954247 Genomic DNA. Translation: CAI89588.1.

3D structure databases

ProteinModelPortaliQ3ICL6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326442.PSHAb0552.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI89588; CAI89588; PSHAb0552.
KEGGipha:PSHAb0552.
PATRICi32300708. VBIPseHal105694_3458.

Phylogenomic databases

eggNOGiENOG4105D8C. Bacteria.
COG0580. LUCA.
HOGENOMiHOG000288285.
KOiK02440.
OMAiLSYQSGW.
OrthoDBiEOG6P8TRZ.

Enzyme and pathway databases

BioCyciPHAL326442:GJIU-3612-MONOMER.

Family and domain databases

Gene3Di1.20.1080.10. 1 hit.
InterProiIPR023271. Aquaporin-like.
IPR000425. MIP.
IPR022357. MIP_CS.
[Graphical view]
PANTHERiPTHR19139. PTHR19139. 1 hit.
PfamiPF00230. MIP. 1 hit.
[Graphical view]
PRINTSiPR00783. MINTRINSICP.
SUPFAMiSSF81338. SSF81338. 1 hit.
TIGRFAMsiTIGR00861. MIP. 1 hit.
PROSITEiPS00221. MIP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TAC 125Imported.

Entry informationi

Entry nameiQ3ICL6_PSEHT
AccessioniPrimary (citable) accession number: Q3ICL6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: March 16, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.