Q3IC75 (Q3IC75_PSEHT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Choline dehydrogenase RuleBase RU003969
EC=1.1.99.1 RuleBase RU003969

Gene names

Name:	betA EMBL CAI89455.1
Ordered Locus Names:	PSHAb0418

Organism

Pseudoalteromonas haloplanktis (strain TAC 125) [Complete proteome] [HAMAP]

Taxonomic identifier

326442 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length	555 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. RuleBase RU003969 SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867 RuleBase RU003968
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. RuleBase RU003969 SAAS SAAS007867
Sequence similarities	Belongs to the GMC oxidoreductase family. RuleBase RU003968

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533 RuleBase RU003968
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL CAI89455.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3IC75 [UniParc]. Last modified November 8, 2005. Version 1. Checksum: 5371E79F012C7A65	FASTA	555	60,864
	10 20 30 40 50 60 MSNSYDYIIV GAGSAGCVLA NRLSADKNTR VLLLETGGSD KSIFIKMPTA LSIPMNSDKY 70 80 90 100 110 120 AWQFHTQPEP HLDNREMHCP RGKVLGGSSS INGMVYVRGH AKDFDEWQHN GANGWDYQSC 130 140 150 160 170 180 LPYFQKAESF YLGENKYRGG KGPLGVNNGN EMKNPLYSTF IKAGIEAGYA HTNDYNASQQ 190 200 210 220 230 240 EGFGPMHMTV KDGVRSSAAR EYLDPVKSRN NLTIVTGALA QRVVLEGKKA TGIEYKVNGE 250 260 270 280 290 300 VKTAVAAKEV ILSAGSIGSP HILQLSGIGD SEVLKKAGIE VKHHLPGVGQ NLQDHLEFYF 310 320 330 340 350 360 QYKCKQPITL NGKLGLISKG LIGARWLLTR KGLGATNHFE SCAFIRSKPG VEWPDLQYHF 370 380 390 400 410 420 LPAAMRYDGR SAFDGHGFQV HVGHNKPKSR GSVTIASADP EQPPKIVFNY LQHQDDIEGF 430 440 450 460 470 480 RACVRLTREI IEQSAFDDYR DEEIQPGKHI QTDAEIDAFV RQTVESAYHP SCSCKMGEDE 490 500 510 520 530 540 LAVVNSNTQV HGIVGLRVVD SSIFPTIPNG NLNGPTIMVA EKAADIILGN KPLAKLNASV 550 AMSANWQTTQ RNSKI

References

[1]

"Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125." Medigue C., Krin E., Pascal G., Barbe V., Bernsel A., Bertin P.N., Cheung F., Cruveiller S., D'Amico S., Duilio A., Fang G., Feller G., Ho C., Mangenot S., Marino G., Nilsson J., Parrilli E., Rocha E.P.C. , Rouy Z., Sekowska A., Tutino M.L., Vallenet D., von Heijne G., Danchin A. Genome Res. 15:1325-1335(2005) [PubMed: 16169927] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR954247 Genomic DNA. Translation: CAI89455.1.
RefSeq	YP_341901.1. NC_007482.1.
3D structure databases
ProteinModelPortal	Q3IC75.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3IC75.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3711456.
GenomeReviews	Gene locus PSHAb0418 in contig CR954247_GR.
KEGG	pha:PSHAb0418.
NMPDR	fig|326442.4.peg.3344.
PATRIC	32300444. VBIPseHal105694_3326.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
PhylomeDB	Q3IC75.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	PHAL326442:PSHAB0418-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3IC75_PSEHT

Accession

Primary (citable) accession number: Q3IC75

Entry history

Integrated into UniProtKB/TrEMBL:	November 8, 2005
Last sequence update:	November 8, 2005
Last modified:	December 14, 2011
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)