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Q3HNQ2 (Q3HNQ2_RHDV) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:RHDV EMBL ABA46865.1
OrganismRabbit hemorrhagic disease virus (RHDV) EMBL ABA46865.1
Taxonomic identifier11976 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeLagovirus
Virus hostOryctolagus cuniculus (Rabbit) [TaxID: 9986]

Protein attributes

Sequence length2344 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

NTP + H2O = NDP + phosphate. SAAS SAAS000605

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). SAAS SAAS000605

Sequence similarities

Contains RdRp catalytic domain. SAAS SAAS000605

Contains SF3 helicase domain. SAAS SAAS000605

Contains SFhelicase domain. SAAS SAAS000605

Sequences

Sequence LengthMass (Da)Tools
Q3HNQ2 [UniParc].

Last modified November 8, 2005. Version 1.
Checksum: B5E2D9F0570D50EE

FASTA2,344257,035
        10         20         30         40         50         60 
MPPMSRLIGM TTAILPEKKP LSFFLDLRDK TPPCCIRATG ELAWPVFLGQ NENEGLLETC 

        70         80         90        100        110        120 
DKCGKWLNGF GNFGLEDLGN VCLCSIAQQK HKFGPVCLCN RAYIHDCGRW RRRSRFLKHY 

       130        140        150        160        170        180 
KALNKVIPCA YQFDEGSSPS VFEGEVDDLF VELGAPTSMG FMDKKLLKKG KKLMDKFVDV 

       190        200        210        220        230        240 
DEPCLTSRDA GLLDSIASDN TIRAKLEEEY GIEMVQAARD RKDFMKNLRL ALDNRPANPV 

       250        260        270        280        290        300 
TWYTKLGNIT DKGKQWAKKV VYGACKATEP LKTLASILLV GLHNVIAVDT TVMLSTFKPV 

       310        320        330        340        350        360 
NLLAILMDWT NDLTGFVTTL VRLLELYGVV QVTVNLIIEG VKSFWDKVIC ATDRCFDLLK 

       370        380        390        400        410        420 
RLFDTFEDSV PTGPTAGCLI FMAFVFSTVV GYLPNNNVIT TFMKGAGKLT TFAGVIGAIR 

       430        440        450        460        470        480 
TLWITINQHM VAKDLTSIQQ KVMTVVKMAN EAATLDQLEI VSCLCSDLEN TLTNRCTLPS 

       490        500        510        520        530        540 
YNQHLGILNA SQKVVSDLHT MVLGKINMTK QRPQPVAVIF KGAPGIGKTH LVHRIARDLG 

       550        560        570        580        590        600 
CQHPSTINFG LDHFDSYTGE EVAIADEFNT CGDGESWVEL FIQMVNTNPC PLNCDKVENK 

       610        620        630        640        650        660 
NKVFNSKYLL CTTNSNTILN ATHPRAGAFY RRVLIVEARN KAVESWQATR HGSRPGKSCY 

       670        680        690        700        710        720 
SKDMSHLTFQ VYPHNMPAPG FVFVGDKLVR SQVAPREYKY SELLDLIKSE HPDVASFEGA 

       730        740        750        760        770        780 
NKFNFIYPDA QYEQALLMWK QYFVMYGCVA RLAKNFVDDI PYNQVHISKA SDPKIDGCVE 

       790        800        810        820        830        840 
YQCKFQHLWR MVPQFVLGCV NMTNQLGTPL TQQQLDRITN GVEGVTVTTV NNILPFHSQT 

       850        860        870        880        890        900 
TLINPSFIKL IWAVRKHLKG LSGVTKVAQF IWRVMTNPVD AYGSLVRTLT GAATFSDNPV 

       910        920        930        940        950        960 
STTIICSNCT IQIHSCGGLL VRYSRDPVPV ASDNADRGDQ GVDVFTDPNL ISGFSWRRIA 

       970        980        990       1000       1010       1020 
HLFVEVISHL CANHLVNLAT MAALGAVATK AFQGVKGKTK RGRGARVNLG NDEYDEWQAA 

      1030       1040       1050       1060       1070       1080 
RREFVNAHDM TAEEYLAMKN KAAMGSDDQD SVMFRSWWTR RQLRPDEDQV TIVGRGGVRN 

      1090       1100       1110       1120       1130       1140 
EVIRTRARQA PKGPKTLDDG GFYDNDYEGL PGFMRHNGSG WMIHIGNGLY ISNTHTARSS 

      1150       1160       1170       1180       1190       1200 
CSEIVTCSPT TDLCLVKGEI IRSVAQIAEG TPVCDWKKSP ISTYGIKKTL SDSTKIDVLA 

      1210       1220       1230       1240       1250       1260 
YDGCTQTTHG DCGLPLYDSS GKIVAIHTGK LLGFSKMCTL VDLTITKGVY ETSNFFCGEP 

      1270       1280       1290       1300       1310       1320 
IDYRGITAHR LVGAEPRPPV SGTRYARVPG VPDEYRTGYR PANLGRGDPD SDKSLMNIAV 

      1330       1340       1350       1360       1370       1380 
KSLQVYQQEP KLDKVDEFIE RAAADVLGYL RFLTKGERQV NLNFKAAFNT LDLSTSCGPF 

      1390       1400       1410       1420       1430       1440 
VPGKKIDHIK DGVMDQVLAK HLYKCWSVAN SGKALHHIYA CGLKDELRPL DKVKEGKKRL 

      1450       1460       1470       1480       1490       1500 
LWGCDVGVAV CAAAVFHNIC YKLKMVARFG PIAVGVDMTS RDFDVIINNL TVKASDFLCL 

      1510       1520       1530       1540       1550       1560 
DYSKWDSTMS PCVVRLAIDI LADCCEQTEL TKSVVLTLKS HPMTILDAMI VQTKRGLPSG 

      1570       1580       1590       1600       1610       1620 
MPFTSVINSI CHWLLWSAAV YKSCAEIGLH CSNLYEDAPF YTYGDDGVYA MTPMMVSLLP 

      1630       1640       1650       1660       1670       1680 
AIIENLRDYG LSPTAADKTE FIDVCPLNKI SFLKRTFELT DIGWVSKLDK SSILRQLEWS 

      1690       1700       1710       1720       1730       1740 
KTTSRHMVIE ETYDLAKEER GVQLEELQVA AAAHGQEFFN FVRKELERQQ AYTQFSVYSY 

      1750       1760       1770       1780       1790       1800 
DAARKVLADR KRVVSVVPDD EFVNVMEGKT RTAPQGEAAG TATTASVPGT TTDGMDPGVV 

      1810       1820       1830       1840       1850       1860 
AATSVVTAEN SSASVATAGI GGPPQQVDQQ ETWRTNFYYN DVFTWSVADA PGSILYTVQH 

      1870       1880       1890       1900       1910       1920 
SPQNNPFTAV LSQMYAGWAG GMQFRFIVAG SGVFGGRLVA AVIPPGIEIG PGLEVRQFPH 

      1930       1940       1950       1960       1970       1980 
VVIDARSLEP VTITMPDLRP NMYHPTGDPG LVPTLVLSVY NNLINPFGGS TNAIQVTVET 

      1990       2000       2010       2020       2030       2040 
RPSDDFEFVM IRAPSSKTVD SISPAGLLTT PVLTGVGNDN RWNGQIVGLQ PVPGGFSTCN 

      2050       2060       2070       2080       2090       2100 
RHWNLNGSTY GWSSPRFADI DHRRGSASYS GNSSTNVLQF WYANAGSAID NPISQVAPDG 

      2110       2120       2130       2140       2150       2160 
FPDMSFVPFN SPNIPTAGWV GFGGIWNSNN GAPAATTVQA YELGFATGAP NNLQPTTNTS 

      2170       2180       2190       2200       2210       2220 
GAQTVAKSIY AVVTGTNQNP TGLFVMASGV ISTPNASAVT YTPQPDRIVT TPGTPAAAPV 

      2230       2240       2250       2260       2270       2280 
GKNTPIMFAS VVRRTGDVNA AAGSTNGTQY GTGSQPLPVT IGLSLNNYSS ALMPGQFFVW 

      2290       2300       2310       2320       2330       2340 
QLTFASGFME IGLSVDGYFY AGTGASTTLI DLTELIDVRP VGPRPSKSTL VFNLGGTTNG 


FSYV 

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References

[1]"Sequencing and analyzing the complete nucleotide sequence of Rabbit haemorrhagic disease virus JX/CHA/97 strain isolated from China."
Liu G., Ni Z., Zhang Y., Yun T.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: JX/CHA/97 EMBL ABA46865.1.
[2]"Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography."
Wang X., Xu F., Liu J., Gao B., Liu Y., Zhai Y., Ma J., Zhang K., Baker T.S., Schulten K., Zheng D., Pang H., Sun F.
PLoS Pathog. 9:e1003132-e1003132(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 1766-1995.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ205345 mRNA. Translation: ABA46865.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4EGTX-ray2.00A/B1993-2344[»]
4EJRX-ray2.00A/B1766-1995[»]
ProteinModelPortalQ3HNQ2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.120.20. 1 hit.
3.40.50.300. 2 hits.
InterProIPR003593. AAA+_ATPase.
IPR004005. Calicivirus_coat.
IPR004004. Helic/Pol/Pept_Calicivir-typ.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR000317. Peptidase_C24.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00915. Calici_coat. 1 hit.
PF03510. Peptidase_C24. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
PRINTSPR00916. 2CENDOPTASE.
PR00918. CALICVIRUSNS.
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF50494. SSF50494. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3HNQ2_RHDV
AccessionPrimary (citable) accession number: Q3HNQ2
Entry history
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: July 9, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)